CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002955.1-P	Field mustard	plastid	99.28	99.28
CDY17274	Canola	plastid	99.28	99.28
CDY52572	Canola	plastid	87.2	92.56
AT5G54800.1	Thale cress	plastid	85.75	91.49
CDY43022	Canola	plastid	85.51	90.77
Os07t0523965-01	Rice	plasma membrane	55.56	83.64
Os07t0523600-01	Rice	plastid	55.56	83.64
OQU90029	Sorghum	cytosol, plasma membrane, vacuole	49.52	82.33
CDY06630	Canola	plastid	87.92	80.53
CDY28750	Canola	plastid	87.2	80.22
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	11.59	76.19
CDY34641	Canola	plastid	64.73	73.83
CDY55220	Canola	plastid	68.84	73.64
GSMUA_Achr7P03380_001	Banana	plastid	69.32	73.03
CDY25324	Canola	plastid	68.84	72.15
KRH11399	Soybean	plastid	67.15	71.1
KRH20881	Soybean	plastid	66.91	70.84
GSMUA_Achr9P11730_001	Banana	plastid	67.63	69.83
TraesCS2A01G220400.1	Wheat	plastid	64.25	69.27
TraesCS2B01G245900.1	Wheat	plastid	64.01	69.01
GSMUA_Achr8P07300_001	Banana	mitochondrion, plastid	69.32	65.98
GSMUA_Achr4P33530_001	Banana	plastid	65.7	65.7
Zm00001d021653_P001	Maize	plastid	61.84	65.47
Zm00001d006511_P002	Maize	plastid	62.32	61.28
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	64.01	59.82
TraesCS2D01G226000.2	Wheat	plastid	63.77	59.59
HORVU2Hr1G045900.2	Barley	plastid	64.49	58.68
Os07t0523400-01	Rice	plasma membrane	32.85	47.89
KRH02096	Soybean	plastid	68.36	46.85
CDY16905	Canola	plastid	43.48	44.89
CDY38448	Canola	plastid	43.24	44.53
CDY33455	Canola	plastid	34.06	34.64
CDX77632	Canola	plastid	34.06	34.22
CDY48790	Canola	mitochondrion	32.85	33.75
CDX91942	Canola	plastid	29.47	31.85
CDX74305	Canola	plastid	28.99	31.41
CDY04362	Canola	plastid	18.12	31.38
CDY12390	Canola	plastid	30.43	31.34
CDY47555	Canola	plastid	30.43	30.96
CDY53419	Canola	mitochondrion	33.33	26.85

Protein Annotations

MapMan:24.2.1.1.1	GO:A0A078G356	UniProt:A0A078G356	EnsemblPlants:CDY19859	ProteinID:CDY19859	ProteinID:CDY19859.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00009627001	PFAM:PF03151	PANTHER:PTHR43973
PANTHER:PTHR43973:SF1	SUPFAM:SSF103481	InterPro:Sugar_P_trans_dom	TIGRFAMs:TIGR00817	TMHMM:TMhelix	InterPro:Tpt_PEP_transl
UniParc:UPI0004EE451B	SEG:seg	:	:	:	:

Description

BnaC09g31250DBnaC09g31250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G356]

Coordinates

chrLK032101:+:58793..61311

Molecular Weight (calculated)

45193.3 Da

IEP (calculated)

10.231

GRAVY (calculated)

0.301

Length

414 amino acids

Sequence
(BLAST)

001: MVLAAKQALS AKIGFSNPLS RRNPSSPLQR SPLAASFPST DLRKRTVLAV SKPLHLSPMR AKPPARREAY EADKSEPQPI DDDAAETKSE AAKKLKIGIY
101: FATWWALNVV FNIYNKKVLN AYPYPWLTST LSLAAGSLMM LISWAVGIVE TPKTDFDFWK TLFPVAVAHT IGHVAATVSM SKVAVSFTHI IKSGEPAFSV
201: LVSRFLLGET FPTSVYLSLI PIIGGCALSA LTELNFNMTG FMGAMISNLA FVFRNIFSKK GMKGKSVSGM NYYACLSMLS LLILTPFAIA VEGPQMWIDG
301: WQKALSDVGP QFVGWVAAQS VFYHLYNQVS YMSLDQISPL TFSVGNTMKR ISVIVSSIII FRTPVQPVNA LGAAIAILGT FLYSQPHDDP LAVWLKLTIT
401: SSTSSRINIL KSSS

Best Arabidopsis Sequence Match ( AT5G54800.1 )
(BLAST)

001: MVLSVKQTLS PKIGLFRRNP SSSLGRSPVS LSFPSTELPK RTVLAVSKPL HLSSSLRAKS PVVRCEAYEA DRSEPHPIGD DAAAAETKSE AAKKLKIGIY
101: FATWWALNVV FNIYNKKVLN AYPYPWLTST LSLAAGSLMM LISWAVGIVE TPKTDFDFWK TLFPVAVAHT IGHVAATVSM SKVAVSFTHI IKSGEPAFSV
201: LVSRFILGET FPTSVYLSLI PIIGGCALSA LTELNFNMIG FMGAMISNLA FVFRNIFSKK GMKGKSVSGM NYYACLSMLS LLILTPFAIA VEGPQMWVDG
301: WQTALATVGP QFVWWVVAQS VFYHLYNQVS YMSLDQISPL TFSVGNTMKR ISVIVSSIII FRTPVQPVNA LGAAIAILGT FLYSQAKL

Arabidopsis Description

GPT1GPT1 [Source:UniProtKB/TrEMBL;Acc:A0A178UL59]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.