Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G252200.1 | Wheat | nucleus | 95.85 | 97.77 |
| TraesCS6A01G272000.1 | Wheat | nucleus | 95.41 | 96.68 |
| HORVU6Hr1G068770.1 | Barley | nucleus | 93.45 | 94.27 |
| Zm00001d020667_P001 | Maize | nucleus | 23.14 | 79.7 |
| Os02t0704600-01 | Rice | nucleus | 72.71 | 73.03 |
| OQU85551 | Sorghum | cytosol, plastid | 67.47 | 68.21 |
| OQU78405 | Sorghum | nucleus | 61.57 | 66.2 |
| Zm00001d038964_P001 | Maize | nucleus | 59.83 | 64.47 |
| Zm00001d051562_P001 | Maize | plastid | 61.35 | 63.72 |
| Zm00001d017768_P006 | Maize | cytosol | 64.63 | 62.32 |
| GSMUA_Achr2P22980_001 | Banana | cytosol, nucleus, peroxisome, plastid | 42.79 | 47.12 |
| GSMUA_Achr6P08980_001 | Banana | nucleus | 41.7 | 46.59 |
| GSMUA_Achr1P12060_001 | Banana | plastid | 39.08 | 45.43 |
| CDX73773 | Canola | cytosol | 36.46 | 40.53 |
| Bra037167.1-P | Field mustard | mitochondrion | 18.56 | 40.28 |
| Bra036850.1-P | Field mustard | plastid | 35.81 | 39.52 |
| CDX77962 | Canola | nucleus, plastid | 35.59 | 39.28 |
| CDX90677 | Canola | nucleus | 34.72 | 38.97 |
| KRH08190 | Soybean | nucleus | 36.9 | 38.76 |
| CDY28989 | Canola | nucleus | 35.37 | 38.66 |
| Bra012880.1-P | Field mustard | nucleus | 34.28 | 38.48 |
| AT3G50910.1 | Thale cress | cytosol | 36.03 | 36.91 |
| KRH76747 | Soybean | plastid | 34.28 | 36.01 |
| VIT_04s0023g02110.t01 | Wine grape | endoplasmic reticulum | 38.65 | 35.54 |
| CDY18608 | Canola | nucleus | 27.73 | 34.99 |
| Solyc02g085000.2.1 | Tomato | nucleus | 34.28 | 33.98 |
| KRH28715 | Soybean | cytosol | 30.35 | 33.9 |
| AT5G66480.1 | Thale cress | plastid | 31.88 | 32.88 |
| PGSC0003DMT400009054 | Potato | nucleus, plastid | 33.62 | 32.02 |
| CDY67893 | Canola | nucleus | 22.49 | 29.86 |
| KRH69884 | Soybean | nucleus | 34.93 | 22.1 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G299600.1 | EnsemblPlantsGene:TraesCS6B01G299600 | ncoils:Coil | PANTHER:PTHR35490 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:537463203..537466083
Molecular Weight (calculated)
50302.3 Da
IEP (calculated)
4.467
GRAVY (calculated)
-0.666
Length
458 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTITHYVLD PFLETGSLPN LQKLVPKPPP AAPLPPEKSS EKPIPVPVAP ARTTTLPALY STPESTPLPD SPSSFPGTWS PYLINHKRRG PGLIKTSSQG
101: DVGSEGSLPK FPEGLPALPK RSEAFQVQES EFRFTQESDG VVNNGVEETL DEQNEGVQKG KVTLFGQDEQ DQPEFEFQHE SPDVLMRPVN VGRLVNVARL
201: VNNGMPRNGE NDAFLEPQDS QSVTSNSEAE DAGGQGWWKP SSPYGTSAGT PGAEFYDAFE EISSDGATRS SRCVDDEYRE MRLSMLTEIE GRKQAEEVAE
301: TWQKEWKKLS HHLSLIALSL PSPTVAENDD DTSADPGAEL CQQITVSQLV AAAIARGIAR VEVESEMESV ISAKNFEIAR LSDRVQYYEA ANREMSQRNQ
401: EAIEMSRQQR NKRKMRQKWF WGSVGIAVTL GTAAIAWSYM PASQSQAGDS NSTNTNSD
101: DVGSEGSLPK FPEGLPALPK RSEAFQVQES EFRFTQESDG VVNNGVEETL DEQNEGVQKG KVTLFGQDEQ DQPEFEFQHE SPDVLMRPVN VGRLVNVARL
201: VNNGMPRNGE NDAFLEPQDS QSVTSNSEAE DAGGQGWWKP SSPYGTSAGT PGAEFYDAFE EISSDGATRS SRCVDDEYRE MRLSMLTEIE GRKQAEEVAE
301: TWQKEWKKLS HHLSLIALSL PSPTVAENDD DTSADPGAEL CQQITVSQLV AAAIARGIAR VEVESEMESV ISAKNFEIAR LSDRVQYYEA ANREMSQRNQ
401: EAIEMSRQQR NKRKMRQKWF WGSVGIAVTL GTAAIAWSYM PASQSQAGDS NSTNTNSD
001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
Arabidopsis Description
AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.