Factsheet for TraesCS2A01G253100.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT1G79040.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT1G79040.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT1G79040.1	TraesCS1A01G340600.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS1D01G342600.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3A01G274800.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3A01G313000.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3B01G158900.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3B01G308400.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3D01G141300.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3D01G274500.1	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G253900.2	Wheat	plastid	85.19	79.77
EER95861	Sorghum	plastid	58.02	68.61
Os07t0147550-00	Rice	plastid	57.41	66.91
HORVU2Hr1G038960.1	Barley	plastid	65.43	63.86
TraesCS6A01G374400.2	Wheat	plastid	53.09	61.87
VIT_19s0027g00200.t01	Wine grape	plastid	47.53	55.4
TraesCS6A01G358100.1	Wheat	plastid	42.59	54.33
Solyc07g066310.2.1	Tomato	plastid	45.06	52.9
Solyc12g017250.1.1	Tomato	plastid	44.44	52.55
PGSC0003DMT400057257	Potato	plastid	43.83	51.45
KRH43824	Soybean	nucleus, plastid	43.83	51.08
Bra003624.1-P	Field mustard	plastid	44.44	51.06
CDX68011	Canola	plastid	44.44	51.06
KRH13645	Soybean	nucleus, plastid	43.21	50.72
CDY68385	Canola	plastid	43.21	50.72
CDY22238	Canola	plastid	43.21	50.72
CDX79287	Canola	plastid	43.83	50.35
CDY72298	Canola	plastid	43.21	50.0
CDX88501	Canola	plastid	43.21	50.0
Bra035087.1-P	Field mustard	plastid	43.21	50.0
Bra008392.1-P	Field mustard	plastid	42.59	50.0
AT1G79040.1	Thale cress	plastid	42.59	49.29
PGSC0003DMT400005956	Potato	plastid	36.42	49.17
TraesCS2B01G272900.1	Wheat	plastid	41.98	26.05

Protein Annotations

EnsemblPlants:TraesCS2A01G253100.2	EnsemblPlantsGene:TraesCS2A01G253100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0042651	InterPro:PSII_PsbR	PANTHER:PTHR34369	PANTHER:PTHR34369:SF1	PFAM:PF04725
SEG:seg	TMHMM:TMhelix	MapMan:1.1.1.2.9	:	:	:

Description

No Description!

Coordinates

chr2A:+:385002329..385003383

Molecular Weight (calculated)

17534.8 Da

IEP (calculated)

9.794

GRAVY (calculated)

-0.297

Length

162 amino acids

Sequence
(BLAST)

001: MRLKQYIELF HQSLSPFQQA RSSSFRVMSK KAKKVQSSQP FGPGGGLELK DGVDASGRPA KGKGVYQFAS KYGANVDGYN PIYNPEEWSP SGDYYAGGKH
101: TQVSGNNDLK ALASVDSFLW ERNNIHALVY AGKTGLLLWV VTLAGILLGG ALLVYNTSDL AS

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.