Factsheet for HORVU2Hr1G038960.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G076010.1
HORVU2Hr1G084420.1
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	HORVU2Hr1G084420.1	AT1G27300.1	21798944
AT1G79040.1	HORVU1Hr1G076010.1	AT3G16310.1	21798944
AT1G79040.1	HORVU3Hr1G026980.2	AT3G16310.1	21798944
AT1G79040.1	HORVU3Hr1G071060.1	AT3G16310.1	21798944
AT1G79040.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0147550-00	Rice	plastid	65.06	77.7
EER95861	Sorghum	plastid	63.25	76.64
TraesCS2D01G253900.2	Wheat	plastid	78.31	75.14
TraesCS2A01G253100.2	Wheat	plastid	63.86	65.43
HORVU2Hr1G038940.4	Barley	plastid	56.02	62.84
VIT_19s0027g00200.t01	Wine grape	plastid	51.2	61.15
KRH43824	Soybean	nucleus, plastid	48.8	58.27
KRH13645	Soybean	nucleus, plastid	48.19	57.97
Solyc12g017250.1.1	Tomato	plastid	47.59	57.66
Solyc07g066310.2.1	Tomato	plastid	47.59	57.25
CDY22238	Canola	plastid	46.99	56.52
CDY68385	Canola	plastid	46.99	56.52
Bra003624.1-P	Field mustard	plastid	47.59	56.03
CDX68011	Canola	plastid	47.59	56.03
Bra008392.1-P	Field mustard	plastid	46.39	55.8
CDX79287	Canola	plastid	46.99	55.32
PGSC0003DMT400057257	Potato	plastid	45.78	55.07
CDY72298	Canola	plastid	46.39	55.0
CDX88501	Canola	plastid	46.39	55.0
Bra035087.1-P	Field mustard	plastid	46.39	55.0
AT1G79040.1	Thale cress	plastid	45.78	54.29
PGSC0003DMT400005956	Potato	plastid	39.16	54.17
TraesCS2B01G272900.1	Wheat	plastid	53.01	33.72
HORVU6Hr1G085170.3	Barley	plastid	25.9	30.71

Protein Annotations

MapMan:1.1.1.2.9	UniProt:A0A287HRM9	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0042651	EnsemblPlantsGene:HORVU2Hr1G038960	EnsemblPlants:HORVU2Hr1G038960.1	PFAM:PF04725
InterPro:PSII_PsbR	PANTHER:PTHR34369	PANTHER:PTHR34369:SF1	TMHMM:TMhelix	UniParc:UPI000B485D42	SEG:seg

Description

No Description!

Coordinates

chrchr2H:+:185340761..185342159

Molecular Weight (calculated)

18038.5 Da

IEP (calculated)

9.768

GRAVY (calculated)

-0.219

Length

166 amino acids

Sequence
(BLAST)

001: MATSTMAFMP LKPSPSTFSG HSQLQRIQPF TRSSSFRVMS KKAKKVQTSQ PFGPGGGLEL KDGVDASGRP AKVSFQAEEM CFLSNKYHYP SLNIAHFYQG
101: KGVYQFASKY GANVDGYSPI YNPEEWSPSG DYYAGGKTWL LLWVATLAGI LLGGALLVYN TSALAS

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.