Factsheet for Solyc12g017250.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 10

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc03g120880.2.1
Solyc05g015640.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT1G79040.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT1G79040.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT1G79040.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT1G79040.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT1G79040.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005956	Potato	plastid	81.75	93.33
VIT_19s0027g00200.t01	Wine grape	plastid	71.53	70.5
Solyc07g066310.2.1	Tomato	plastid	69.34	68.84
KRH43824	Soybean	nucleus, plastid	68.61	67.63
KRH13645	Soybean	nucleus, plastid	67.15	66.67
GSMUA_Achr9P30450_001	Banana	mitochondrion	64.23	66.67
CDX79287	Canola	plastid	67.88	65.96
Bra003624.1-P	Field mustard	plastid	67.15	65.25
CDX68011	Canola	plastid	67.15	65.25
CDY68385	Canola	plastid	64.96	64.49
CDY22238	Canola	plastid	64.96	64.49
EES13497	Sorghum	plastid	62.04	64.39
CDY72298	Canola	plastid	65.69	64.29
Bra035087.1-P	Field mustard	plastid	65.69	64.29
CDX88501	Canola	plastid	65.69	64.29
EER95861	Sorghum	plastid	64.23	64.23
Zm00001d049387_P001	Maize	plastid	59.85	64.06
Bra008392.1-P	Field mustard	plastid	64.23	63.77
AT1G79040.1	Thale cress	plastid	64.23	62.86
TraesCS6D01G358900.1	Wheat	plastid	63.5	62.14
TraesCS6A01G374400.2	Wheat	plastid	62.04	61.15
TraesCS6B01G412100.1	Wheat	plastid	62.04	60.71
TraesCS6D01G340700.1	Wheat	plastid	56.2	60.63
TraesCS6A01G358100.1	Wheat	plastid	56.2	60.63
TraesCS6B01G390600.1	Wheat	plastid	56.2	60.63
Os07t0147550-00	Rice	plastid	61.31	60.43
Os07t0147500-01	Rice	plastid	59.85	59.85
HORVU2Hr1G038940.4	Barley	plastid	59.12	54.73
HORVU2Hr1G038960.1	Barley	plastid	57.66	47.59
TraesCS2D01G253900.2	Wheat	plastid	59.12	46.82
TraesCS2A01G253100.2	Wheat	plastid	52.55	44.44
HORVU6Hr1G085170.3	Barley	plastid	33.58	32.86
TraesCS2B01G272900.1	Wheat	plastid	36.5	19.16

Protein Annotations

MapMan:1.1.1.2.9	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0042651	UniProt:K4DD59	PFAM:PF04725	InterPro:PSII_PsbR	PANTHER:PTHR34369
EnsemblPlantsGene:Solyc12g017250.1	EnsemblPlants:Solyc12g017250.1.1	TMHMM:TMhelix	UniParc:UPI000276AB15	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:6437428..6440880

Molecular Weight (calculated)

14197.1 Da

IEP (calculated)

10.164

GRAVY (calculated)

-0.044

Length

137 amino acids

Sequence
(BLAST)

001: MSSSGVMMMS SFSLKPSLLS VEKASIARPS NSKLIVKASG GKKITTDKPY GINGGLNLQD GVDASGRKAK GKGVYQFVKK YGANVDGYSP IYNPDEWSPS
101: GDVYVGGTTG LALWAITLAG LLAGGALLVY NTSSLAR

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.