Factsheet for PGSC0003DMT400005956

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006495
PGSC0003DMT400015077
PGSC0003DMT400050482
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT1G79040.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT1G79040.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G79040.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT1G79040.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G79040.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g017250.1.1	Tomato	plastid	93.33	81.75
KRH43824	Soybean	nucleus, plastid	70.0	60.43
KRH13645	Soybean	nucleus, plastid	68.33	59.42
VIT_19s0027g00200.t01	Wine grape	plastid	68.33	58.99
PGSC0003DMT400057257	Potato	plastid	67.5	58.7
GSMUA_Achr9P30450_001	Banana	mitochondrion	62.5	56.82
CDX79287	Canola	plastid	65.83	56.03
Bra003624.1-P	Field mustard	plastid	65.0	55.32
CDX68011	Canola	plastid	65.0	55.32
CDY68385	Canola	plastid	63.33	55.07
CDY22238	Canola	plastid	63.33	55.07
Bra008392.1-P	Field mustard	plastid	62.5	54.35
CDY72298	Canola	plastid	63.33	54.29
Bra035087.1-P	Field mustard	plastid	63.33	54.29
CDX88501	Canola	plastid	63.33	54.29
AT1G79040.1	Thale cress	plastid	62.5	53.57
EER95861	Sorghum	plastid	60.83	53.28
Zm00001d049387_P001	Maize	plastid	55.83	52.34
EES13497	Sorghum	plastid	56.67	51.52
TraesCS6B01G412100.1	Wheat	plastid	60.0	51.43
Os07t0147550-00	Rice	plastid	59.17	51.08
TraesCS6A01G374400.2	Wheat	plastid	59.17	51.08
TraesCS6D01G358900.1	Wheat	plastid	59.17	50.71
TraesCS6D01G340700.1	Wheat	plastid	53.33	50.39
TraesCS6A01G358100.1	Wheat	plastid	53.33	50.39
TraesCS6B01G390600.1	Wheat	plastid	53.33	50.39
Os07t0147500-01	Rice	plastid	56.67	49.63
HORVU2Hr1G038940.4	Barley	plastid	55.83	45.27
HORVU2Hr1G038960.1	Barley	plastid	54.17	39.16
TraesCS2D01G253900.2	Wheat	plastid	55.83	38.73
TraesCS2A01G253100.2	Wheat	plastid	49.17	36.42
HORVU6Hr1G085170.3	Barley	plastid	36.67	31.43
TraesCS2B01G272900.1	Wheat	plastid	40.83	18.77

Protein Annotations

MapMan:1.1.1.2.9	EntrezGene:102604273	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0042651	UniProt:M0ZQL7	PFAM:PF04725	EnsemblPlantsGene:PGSC0003DMG400002312
PGSC:PGSC0003DMG400002312	EnsemblPlants:PGSC0003DMT400005956	InterPro:PSII_PsbR	PANTHER:PTHR34369	PANTHER:PTHR34369:SF2	TMHMM:TMhelix
UniParc:UPI0002959A4E	SEG:seg	:	:	:	:

Description

Photosystem II 10 kDa polypeptide, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400002312]

Coordinates

chr12:+:10689710..10691855

Molecular Weight (calculated)

12356.2 Da

IEP (calculated)

10.775

GRAVY (calculated)

0.087

Length

120 amino acids

Sequence
(BLAST)

001: MASSGVMMMS SFSLKPSLLR VEKASIARPS NSKLIVKASG GKKITTNKPY GINGGLNLQD GVDASGRKAK GKGVYQFVKK YGANVDGYTG TTGLALWAVT
101: LVGLLAGGAL LVYNTSALAQ

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.