CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES02290
EES05123
EES19830

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	EES05123	AT1G27300.1	21798944
AT1G79040.1	EES02290	AT3G16310.1	21798944
AT1G79040.1	EES19830	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0147550-00	Rice	plastid	83.94	82.73
TraesCS6A01G374400.2	Wheat	plastid	75.91	74.82
TraesCS6B01G412100.1	Wheat	plastid	75.91	74.29
Os07t0147500-01	Rice	plastid	72.99	72.99
TraesCS6D01G358900.1	Wheat	plastid	73.72	72.14
VIT_19s0027g00200.t01	Wine grape	plastid	70.07	69.06
HORVU2Hr1G038940.4	Barley	plastid	74.45	68.92
Solyc12g017250.1.1	Tomato	plastid	64.23	64.23
Solyc07g066310.2.1	Tomato	plastid	64.23	63.77
PGSC0003DMT400057257	Potato	plastid	64.23	63.77
HORVU2Hr1G038960.1	Barley	plastid	76.64	63.25
TraesCS2D01G253900.2	Wheat	plastid	79.56	63.01
CDY22238	Canola	plastid	62.04	61.59
CDY68385	Canola	plastid	62.04	61.59
EES13497	Sorghum	plastid	59.12	61.36
KRH43824	Soybean	nucleus, plastid	62.04	61.15
CDX68011	Canola	plastid	62.77	60.99
Bra003624.1-P	Field mustard	plastid	62.77	60.99
KRH13645	Soybean	nucleus, plastid	61.31	60.87
Bra008392.1-P	Field mustard	plastid	61.31	60.87
PGSC0003DMT400005956	Potato	plastid	53.28	60.83
CDX79287	Canola	plastid	62.04	60.28
CDY72298	Canola	plastid	61.31	60.0
CDX88501	Canola	plastid	61.31	60.0
Bra035087.1-P	Field mustard	plastid	61.31	60.0
AT1G79040.1	Thale cress	plastid	60.58	59.29
TraesCS2A01G253100.2	Wheat	plastid	68.61	58.02
TraesCS2B01G272900.1	Wheat	plastid	52.55	27.59

Protein Annotations

MapMan:1.1.1.2.9	EntrezGene:8079922	UniProt:C5X9H4	EnsemblPlants:EER95861	ProteinID:EER95861	ProteinID:EER95861.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523
GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0042651	PFAM:PF04725	InterPro:PSII_PsbR	PANTHER:PTHR34369	PANTHER:PTHR34369:SF1	EnsemblPlantsGene:SORBI_3002G032700
TMHMM:TMhelix	UniParc:UPI0001A82EA2	RefSeq:XP_002459340.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:2996698..2998189

Molecular Weight (calculated)

14362.3 Da

IEP (calculated)

10.500

GRAVY (calculated)

-0.075

Length

137 amino acids

Sequence
(BLAST)

001: MAASVMASLS LKPSPFLDRS RFTSVQPSAR SSTFRVMAKK TKKIKTSQPF GPAGGLNLKD GVDASGRPAK GKGVYQFANK YGANVDGYSP IYNPEEWSPS
101: GDVYVGGKTG LLLWAVTLAG ILLGGALLIY NTSALAS

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.