Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 11
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13645 | Soybean | nucleus, plastid | 97.12 | 97.83 |
| VIT_19s0027g00200.t01 | Wine grape | plastid | 81.3 | 81.3 |
| GSMUA_Achr9P30450_001 | Banana | mitochondrion | 75.54 | 79.55 |
| CDY68385 | Canola | plastid | 78.42 | 78.99 |
| CDY22238 | Canola | plastid | 78.42 | 78.99 |
| Bra008392.1-P | Field mustard | plastid | 77.7 | 78.26 |
| Bra003624.1-P | Field mustard | plastid | 79.14 | 78.01 |
| CDX79287 | Canola | plastid | 79.14 | 78.01 |
| CDX68011 | Canola | plastid | 79.14 | 78.01 |
| CDY72298 | Canola | plastid | 78.42 | 77.86 |
| Bra035087.1-P | Field mustard | plastid | 78.42 | 77.86 |
| CDX88501 | Canola | plastid | 76.98 | 76.43 |
| AT1G79040.1 | Thale cress | plastid | 76.98 | 76.43 |
| Zm00001d049387_P001 | Maize | plastid | 69.06 | 75.0 |
| PGSC0003DMT400005956 | Potato | plastid | 60.43 | 70.0 |
| TraesCS6A01G358100.1 | Wheat | plastid | 63.31 | 69.29 |
| Solyc12g017250.1.1 | Tomato | plastid | 67.63 | 68.61 |
| TraesCS6B01G390600.1 | Wheat | plastid | 62.59 | 68.5 |
| TraesCS6D01G340700.1 | Wheat | plastid | 62.59 | 68.5 |
| EES13497 | Sorghum | plastid | 64.75 | 68.18 |
| Os07t0147550-00 | Rice | plastid | 63.31 | 63.31 |
| EER95861 | Sorghum | plastid | 61.15 | 62.04 |
| TraesCS6A01G374400.2 | Wheat | plastid | 61.87 | 61.87 |
| Os07t0147500-01 | Rice | plastid | 60.43 | 61.31 |
| TraesCS6D01G358900.1 | Wheat | plastid | 60.43 | 60.0 |
| TraesCS6B01G412100.1 | Wheat | plastid | 60.43 | 60.0 |
| HORVU2Hr1G038940.4 | Barley | plastid | 58.99 | 55.41 |
| HORVU2Hr1G038960.1 | Barley | plastid | 58.27 | 48.8 |
| TraesCS2D01G253900.2 | Wheat | plastid | 59.71 | 47.98 |
| TraesCS2A01G253100.2 | Wheat | plastid | 51.08 | 43.83 |
| HORVU6Hr1G085170.3 | Barley | plastid | 41.73 | 41.43 |
| TraesCS2B01G272900.1 | Wheat | plastid | 40.29 | 21.46 |
Protein Annotations
| MapMan:1.1.1.2.9 | EntrezGene:100499745 | EMBL:ACUP02004897 | EMBL:BT089386 | UniProt:C6SW43 | EnsemblPlantsGene:GLYMA_08G173700 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009523 |
| GO:GO:0009579 | GO:GO:0009654 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0042651 | EnsemblPlants:KRH43824 | ProteinID:KRH43824 | ProteinID:KRH43824.1 | PFAM:PF04725 | InterPro:PSII_PsbR |
| PANTHER:PTHR34369 | PANTHER:PTHR34369:SF2 | TMHMM:TMhelix | UniParc:UPI0001B15A0C | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr8:+:13837540..13840382
Molecular Weight (calculated)
14340.2 Da
IEP (calculated)
10.187
GRAVY (calculated)
-0.034
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSVMASVA LKPAPFTVEK SSVRGLPSLS RNSSSFRVVA SGGKKIKTDK PYGINGGMAL REGVDASGRK GKGKGVYQFV DKYGANVDGY SPIYDTKDWS
101: PTGDVYAGGT TGLAIWAVTL LGLLAGGALL VYNTSALAQ
101: PTGDVYAGGT TGLAIWAVTL LGLLAGGALL VYNTSALAQ
001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ
Arabidopsis Description
PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.