CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES02290
EES05123
EES19830

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	EES05123	AT1G27300.1	21798944
AT1G79040.1	EES02290	AT3G16310.1	21798944
AT1G79040.1	EES19830	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049387_P001	Maize	plastid	82.58	85.16
TraesCS6A01G358100.1	Wheat	plastid	75.0	77.95
TraesCS6D01G340700.1	Wheat	plastid	74.24	77.17
TraesCS6B01G390600.1	Wheat	plastid	74.24	77.17
VIT_19s0027g00200.t01	Wine grape	plastid	73.48	69.78
GSMUA_Achr9P30450_001	Banana	mitochondrion	69.7	69.7
KRH43824	Soybean	nucleus, plastid	68.18	64.75
CDX79287	Canola	plastid	68.94	64.54
CDY22238	Canola	plastid	67.42	64.49
CDY68385	Canola	plastid	67.42	64.49
Solyc07g066310.2.1	Tomato	plastid	67.42	64.49
KRH13645	Soybean	nucleus, plastid	67.42	64.49
AT1G79040.1	Thale cress	plastid	68.18	64.29
Bra003624.1-P	Field mustard	plastid	68.18	63.83
CDX68011	Canola	plastid	68.18	63.83
PGSC0003DMT400057257	Potato	plastid	66.67	63.77
Bra008392.1-P	Field mustard	plastid	66.67	63.77
CDY72298	Canola	plastid	67.42	63.57
CDX88501	Canola	plastid	67.42	63.57
Bra035087.1-P	Field mustard	plastid	67.42	63.57
Solyc12g017250.1.1	Tomato	plastid	64.39	62.04
EER95861	Sorghum	plastid	61.36	59.12
PGSC0003DMT400005956	Potato	plastid	51.52	56.67
HORVU6Hr1G085170.3	Barley	plastid	50.0	47.14

Protein Annotations

MapMan:1.1.1.2.9	EntrezGene:8071154	UniProt:C5YIF3	EnsemblPlants:EES13497	ProteinID:EES13497	ProteinID:EES13497.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009654
GO:GO:0009719	GO:GO:0009735	GO:GO:0009987	GO:GO:0010270	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0042651	PFAM:PF04725	InterPro:PSII_PsbR	PANTHER:PTHR34369
PANTHER:PTHR34369:SF2	EnsemblPlantsGene:SORBI_3007G071500	unigene:Sbi.14047	TMHMM:TMhelix	UniParc:UPI00016EF1F2	RefSeq:XP_002444002.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:7914921..7916732

Molecular Weight (calculated)

13432.1 Da

IEP (calculated)

10.028

GRAVY (calculated)

0.081

Length

132 amino acids

Sequence
(BLAST)

001: MAASMISSSA LVAPPSRAQG LPSLGRRASS FAVVCGTGKK IKTDKPFGIG GGLTVDKDAS GRKVKGKGVY QFVDKYGANV DGYSPIYNEN EWSPSGNVYV
101: GGTTGLLIWA ITLAGLLGGG ALLVYNTSAL SG

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.