Factsheet for Zm00001d049387_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d016570_P001
Zm00001d038803_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT1G79040.1	Zm00001d050563_P001	AT1G27300.1	21798944
AT1G79040.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT1G79040.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT1G79040.1	Zm00001d038803_P001	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13497	Sorghum	plastid	85.16	82.58
TraesCS6A01G358100.1	Wheat	plastid	75.0	75.59
TraesCS6D01G340700.1	Wheat	plastid	74.22	74.8
TraesCS6B01G390600.1	Wheat	plastid	74.22	74.8
GSMUA_Achr9P30450_001	Banana	mitochondrion	72.66	70.45
VIT_19s0027g00200.t01	Wine grape	plastid	75.78	69.78
KRH43824	Soybean	nucleus, plastid	75.0	69.06
KRH13645	Soybean	nucleus, plastid	74.22	68.84
Solyc07g066310.2.1	Tomato	plastid	71.09	65.94
CDY22238	Canola	plastid	70.31	65.22
CDY68385	Canola	plastid	70.31	65.22
CDX79287	Canola	plastid	71.09	64.54
CDX68011	Canola	plastid	71.09	64.54
Bra003624.1-P	Field mustard	plastid	71.09	64.54
PGSC0003DMT400057257	Potato	plastid	69.53	64.49
Bra008392.1-P	Field mustard	plastid	69.53	64.49
CDY72298	Canola	plastid	70.31	64.29
CDX88501	Canola	plastid	70.31	64.29
Bra035087.1-P	Field mustard	plastid	70.31	64.29
AT1G79040.1	Thale cress	plastid	69.53	63.57
Solyc12g017250.1.1	Tomato	plastid	64.06	59.85
PGSC0003DMT400005956	Potato	plastid	52.34	55.83
HORVU6Hr1G085170.3	Barley	plastid	50.0	45.71

Protein Annotations

MapMan:1.1.1.2.9	ProteinID:AQK50235.1	UniProt:B6SQV5	EMBL:EU955120	EMBL:EU957439	EMBL:EU958213
EMBL:EU958383	EMBL:EU958780	EMBL:EU961665	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009523
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009654	GO:GO:0009719
GO:GO:0009735	GO:GO:0009987	GO:GO:0010270	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0042651	PFAM:PF04725	InterPro:PSII_PsbR	PANTHER:PTHR34369	PANTHER:PTHR34369:SF2
TMHMM:TMhelix	UniParc:UPI0000D6F2C6	EnsemblPlantsGene:Zm00001d049387	EnsemblPlants:Zm00001d049387_P001	EnsemblPlants:Zm00001d049387_T001	SEG:seg

Description

photosystem II3

Coordinates

chr4:-:28605301..28606526

Molecular Weight (calculated)

13061.6 Da

IEP (calculated)

9.321

GRAVY (calculated)

0.084

Length

128 amino acids

Sequence
(BLAST)

001: MAASMISSSA LAVAPQGLPP LGRRASSFAV VCSKKKIKTD KPYGIGGGLT VDVDANGRKG KGKGVYQFVD KYGANVDGYS PIYNEDDWSP TGDVYVGGTT
101: GLLIWAVTLA GILGGGALLV YNTSALSG

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.