Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050563_P001 | Maize | nucleus | 58.14 | 61.88 |
| TraesCS2D01G345400.1 | Wheat | cytosol | 48.84 | 53.57 |
| TraesCS2A01G346700.1 | Wheat | cytosol | 47.91 | 53.09 |
| TraesCS2B01G365000.1 | Wheat | cytosol | 46.98 | 52.6 |
| HORVU2Hr1G084420.1 | Barley | cytosol | 45.58 | 51.04 |
| Os02t0509600-01 | Rice | plasma membrane | 48.84 | 49.76 |
| KRH31520 | Soybean | cytosol | 22.79 | 32.24 |
| KRG97393 | Soybean | nucleus | 26.98 | 30.85 |
| KRH76090 | Soybean | nucleus | 15.81 | 29.57 |
| VIT_01s0010g03800.t01 | Wine grape | cytosol | 26.05 | 28.57 |
| AT1G27300.1 | Thale cress | nucleus | 24.65 | 26.5 |
| PGSC0003DMT400084737 | Potato | cytosol | 24.65 | 25.6 |
| Solyc05g015640.2.1 | Tomato | cytosol | 23.26 | 24.75 |
| CDY27605 | Canola | cytosol | 22.79 | 24.38 |
| CDY15722 | Canola | cytosol | 22.33 | 24.24 |
| CDY03907 | Canola | cytosol | 21.86 | 24.23 |
| Bra032817.1-P | Field mustard | nucleus | 22.33 | 23.88 |
| CDX84933 | Canola | cytosol | 21.86 | 23.86 |
| Bra030034.1-P | Field mustard | cytosol | 21.4 | 23.23 |
Protein Annotations
| EnsemblPlants:Zm00001d016570_P001 | EnsemblPlants:Zm00001d016570_T001 | EnsemblPlantsGene:Zm00001d016570 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR35280 | ProteinID:AQK71173.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000221894A | UniProt:A0A1D6H8X8 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:167856253..167857721
Molecular Weight (calculated)
23406.0 Da
IEP (calculated)
5.441
GRAVY (calculated)
-0.410
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLADGRDDA LNGGVGVGVG VEETRRRRKV ELVQEAIRGF LEEKRSDGQG GGEERLTARL REEEQELLLS LLSKLGELKT DPDPDILEEP SSSRPDHGHQ
101: PAGGGERSKE VEPADIAKDL SKIKRQNTIT HLLLGAVIVL TAVWQVNEVS FLLWLQSKLS NPFKSLGDMV KASLLKLRGR RPVLESSPLP LAGVPDVSRA
201: DLPTFVIGGT EHVGK
101: PAGGGERSKE VEPADIAKDL SKIKRQNTIT HLLLGAVIVL TAVWQVNEVS FLLWLQSKLS NPFKSLGDMV KASLLKLRGR RPVLESSPLP LAGVPDVSRA
201: DLPTFVIGGT EHVGK
001: MESSEDVENL SRAIEKLLHE KRKREASGDA FIEDADDQLF LSSLISQLES PNPKGKEDVI TGEEEEKEEE SADSSPSKGK SEGQRQLEES IEEIAKDIKK
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
Arabidopsis Description
F17L21.9 [Source:UniProtKB/TrEMBL;Acc:Q9FZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.