Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- golgi 3
- extracellular 3
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d040481_P001 | Maize | extracellular, mitochondrion | 76.19 | 76.71 |
| Zm00001d040501_P001 | Maize | extracellular, golgi, plastid | 75.51 | 75.51 |
| Zm00001d040493_P001 | Maize | plastid | 68.03 | 55.25 |
| TraesCS6D01G198000.1 | Wheat | plasma membrane | 50.34 | 53.62 |
| HORVU0Hr1G015930.1 | Barley | extracellular | 51.02 | 53.57 |
| TraesCS6A01G215700.1 | Wheat | extracellular, golgi, plasma membrane | 51.02 | 53.57 |
| KRH52827 | Soybean | extracellular | 46.94 | 53.49 |
| GSMUA_Achr6P30120_001 | Banana | extracellular | 46.94 | 53.08 |
| AT1G10030.1 | Thale cress | extracellular, golgi | 46.26 | 52.71 |
| CDY57928 | Canola | extracellular, golgi, vacuole | 46.26 | 52.71 |
| GSMUA_Achr7P08060_001 | Banana | extracellular, golgi, plasma membrane | 46.26 | 52.31 |
| Bra018466.1-P | Field mustard | extracellular | 45.58 | 51.94 |
| KRH62124 | Soybean | extracellular, golgi | 45.58 | 51.94 |
| CDY63742 | Canola | extracellular, golgi | 45.58 | 51.94 |
| PGSC0003DMT400012718 | Potato | extracellular, golgi | 44.9 | 51.16 |
| Solyc04g077150.2.1 | Tomato | extracellular, golgi | 44.9 | 51.16 |
| CDY31053 | Canola | extracellular | 44.9 | 51.16 |
| VIT_18s0001g08330.t01 | Wine grape | extracellular | 45.58 | 51.15 |
| Zm00001d037522_P001 | Maize | extracellular, golgi | 48.98 | 50.7 |
| CDY20664 | Canola | extracellular | 43.54 | 49.23 |
| Zm00001d031200_P002 | Maize | golgi, plasma membrane | 49.66 | 48.67 |
| TraesCS6B01G245300.1 | Wheat | extracellular, golgi, plasma membrane | 46.26 | 48.57 |
| Zm00001d023774_P002 | Maize | extracellular, golgi, plasma membrane | 49.66 | 44.51 |
| Bra019965.1-P | Field mustard | golgi, plasma membrane | 46.94 | 42.07 |
Protein Annotations
| EnsemblPlants:Zm00001d007729_P001 | EnsemblPlants:Zm00001d007729_T001 | EnsemblPlantsGene:Zm00001d007729 | EntrezGene:103648213 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:Erg28 | PANTHER:PTHR15451 | PFAM:PF03694 | ProteinID:ONM27481.1 | TMHMM:TMhelix |
| UniParc:UPI0002210399 | UniProt:A0A096SC10 | MapMan:35.1 | : | : | : |
Description
Erg28 like protein
Coordinates
chr2:+:238305607..238306483
Molecular Weight (calculated)
16065.7 Da
IEP (calculated)
8.690
GRAVY (calculated)
0.543
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGPSKKQRG MPALGCWLMA VGTFRLAFTW SCFFGSGSLC SATYSEIQVI GVHGRTVAVW TLLSCTLCFL CAFNLTSKPL YAATFLSFVY AFGYLSTECM
101: VYHTMSAASL VPFTFIAVTS MVWMLIQWNS DGHGPRLLHG STASKQP
101: VYHTMSAASL VPFTFIAVTS MVWMLIQWNS DGHGPRLLHG STASKQP
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
Arabidopsis Description
ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.