Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31053 | Canola | extracellular | 93.08 | 93.8 |
| CDY57928 | Canola | extracellular, golgi, vacuole | 92.31 | 93.02 |
| CDY63742 | Canola | extracellular, golgi | 92.31 | 93.02 |
| AT1G10030.1 | Thale cress | extracellular, golgi | 90.0 | 90.7 |
| KRH62124 | Soybean | extracellular, golgi | 73.85 | 74.42 |
| KRH52827 | Soybean | extracellular | 73.08 | 73.64 |
| VIT_18s0001g08330.t01 | Wine grape | extracellular | 73.08 | 72.52 |
| GSMUA_Achr6P30120_001 | Banana | extracellular | 71.54 | 71.54 |
| Os12t0633200-01 | Rice | extracellular, golgi | 75.38 | 70.5 |
| TraesCS2A01G357200.1 | Wheat | extracellular, golgi | 75.38 | 69.01 |
| GSMUA_Achr7P08060_001 | Banana | extracellular, golgi, plasma membrane | 68.46 | 68.46 |
| TraesCS2D01G356000.1 | Wheat | extracellular, golgi, plasma membrane | 74.62 | 68.31 |
| OQU79719 | Sorghum | extracellular, golgi | 74.62 | 68.31 |
| Solyc04g077150.2.1 | Tomato | extracellular, golgi | 67.69 | 68.22 |
| Zm00001d037522_P001 | Maize | extracellular, golgi | 73.85 | 67.61 |
| PGSC0003DMT400012718 | Potato | extracellular, golgi | 66.92 | 67.44 |
| TraesCS2B01G376400.1 | Wheat | golgi | 72.31 | 66.2 |
| EES19099 | Sorghum | golgi, plasma membrane | 73.08 | 65.97 |
| HORVU1Hr1G028210.2 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 53.85 | 64.81 |
| HORVU4Hr1G011970.1 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 67.69 | 64.71 |
| Zm00001d031200_P002 | Maize | golgi, plasma membrane | 74.62 | 64.67 |
| HORVU6Hr1G068400.2 | Barley | endoplasmic reticulum, extracellular | 67.69 | 62.41 |
| HORVU2Hr1G086900.2 | Barley | golgi, plasma membrane | 75.38 | 59.39 |
| HORVU6Hr1G056080.4 | Barley | endoplasmic reticulum, vacuole | 20.0 | 59.09 |
| HORVU0Hr1G015930.1 | Barley | extracellular | 52.31 | 48.57 |
| TraesCS6A01G215700.1 | Wheat | extracellular, golgi, plasma membrane | 52.31 | 48.57 |
| TraesCS6D01G198000.1 | Wheat | plasma membrane | 50.77 | 47.83 |
| TraesCS6B01G245300.1 | Wheat | extracellular, golgi, plasma membrane | 50.0 | 46.43 |
| Zm00001d007729_P001 | Maize | extracellular, golgi, vacuole | 49.23 | 43.54 |
| Zm00001d040481_P001 | Maize | extracellular, mitochondrion | 48.46 | 43.15 |
| Zm00001d040501_P001 | Maize | extracellular, golgi, plastid | 47.69 | 42.18 |
| Zm00001d040493_P001 | Maize | plastid | 46.92 | 33.7 |
| Zm00001d023774_P002 | Maize | extracellular, golgi, plasma membrane | 41.54 | 32.93 |
Protein Annotations
| EnsemblPlants:CDY20664 | EnsemblPlantsGene:GSBRNA2T00012849001 | GO:A0A078G5M7 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Erg28 | PANTHER:PTHR15451 | PFAM:PF03694 | ProteinID:CDY20664 | ProteinID:CDY20664.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EE4F30 | UniProt:A0A078G5M7 | MapMan:35.1 | : | : |
Description
BnaC08g13940DBnaC08g13940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5M7]
Coordinates
chrLK032110:-:528146..530227
Molecular Weight (calculated)
14875.4 Da
IEP (calculated)
8.216
GRAVY (calculated)
0.692
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNPENKPL YLATFLSFIY ALGHFLTEYL FYHTMTIANL
101: STVAFFAGMG CVACMLWEWR SLDQPHSKLA
101: STVAFFAGMG CVACMLWEWR SLDQPHSKLA
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
Arabidopsis Description
ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.