Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G015930.1 | Barley | extracellular | 85.71 | 85.71 |
| TraesCS6D01G198000.1 | Wheat | plasma membrane | 82.86 | 84.06 |
| TraesCS6A01G215700.1 | Wheat | extracellular, golgi, plasma membrane | 82.86 | 82.86 |
| GSMUA_Achr7P08060_001 | Banana | extracellular, golgi, plasma membrane | 50.71 | 54.62 |
| GSMUA_Achr6P30120_001 | Banana | extracellular | 50.71 | 54.62 |
| AT1G10030.1 | Thale cress | extracellular, golgi | 49.29 | 53.49 |
| Bra018466.1-P | Field mustard | extracellular | 48.57 | 52.71 |
| KRH62124 | Soybean | extracellular, golgi | 47.86 | 51.94 |
| CDY63742 | Canola | extracellular, golgi | 47.86 | 51.94 |
| CDY57928 | Canola | extracellular, golgi, vacuole | 47.86 | 51.94 |
| CDY31053 | Canola | extracellular | 47.86 | 51.94 |
| KRH52827 | Soybean | extracellular | 47.14 | 51.16 |
| VIT_18s0001g08330.t01 | Wine grape | extracellular | 47.86 | 51.15 |
| TraesCS2B01G376400.1 | Wheat | golgi | 50.71 | 50.0 |
| CDY20664 | Canola | extracellular | 46.43 | 50.0 |
| Zm00001d040481_P001 | Maize | extracellular, mitochondrion | 50.0 | 47.95 |
| Zm00001d040501_P001 | Maize | extracellular, golgi, plastid | 50.0 | 47.62 |
| PGSC0003DMT400012718 | Potato | extracellular, golgi | 43.57 | 47.29 |
| Solyc04g077150.2.1 | Tomato | extracellular, golgi | 43.57 | 47.29 |
| Zm00001d007729_P001 | Maize | extracellular, golgi, vacuole | 48.57 | 46.26 |
| Bra019965.1-P | Field mustard | golgi, plasma membrane | 48.57 | 41.46 |
| Zm00001d040493_P001 | Maize | plastid | 48.57 | 37.57 |
| Zm00001d023774_P002 | Maize | extracellular, golgi, plasma membrane | 38.57 | 32.93 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G245300.1 | EnsemblPlantsGene:TraesCS6B01G245300 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Erg28 |
| PANTHER:PTHR15451 | PFAM:PF03694 | TMHMM:TMhelix | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr6B:+:438086533..438087564
Molecular Weight (calculated)
15502.9 Da
IEP (calculated)
9.556
GRAVY (calculated)
0.659
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MGATGRKLAA LPALGWWLVV VGAVCLVFAW SGFFDAWAVR SGTYSNTHVT DVHARTVGVW TMLSCTLCFL CAFNLENKPL CAASFLSFVY AYGHFIVEYV
101: LYRTITAASL GTLGFFAVPS IIWTVVRWRN TLGYRATKRS
101: LYRTITAASL GTLGFFAVPS IIWTVVRWRN TLGYRATKRS
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
Arabidopsis Description
ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.