Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G240200.1 | Wheat | cytosol | 92.19 | 91.18 |
| TraesCS7D01G238200.1 | Wheat | cytosol | 85.69 | 85.85 |
| HORVU7Hr1G048940.3 | Barley | cytosol | 80.3 | 75.66 |
| Os08t0497900-01 | Rice | nucleus | 42.94 | 50.0 |
| TraesCS5B01G256500.1 | Wheat | cytosol, golgi, nucleus, plastid | 48.7 | 47.99 |
| EES14314 | Sorghum | nucleus | 38.85 | 41.3 |
| TraesCS2B01G351300.1 | Wheat | cytosol, golgi, nucleus | 16.36 | 29.53 |
| GSMUA_Achr10P... | Banana | cytosol | 25.84 | 27.58 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 29.93 | 27.06 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 19.7 | 26.5 |
| Solyc07g066170.2.1 | Tomato | nucleus | 15.99 | 25.67 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 27.7 | 25.08 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 18.59 | 25.06 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 19.52 | 25.0 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 20.07 | 24.43 |
| CDY24192 | Canola | plastid | 13.75 | 24.42 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 27.51 | 24.1 |
| CDX82542 | Canola | plastid | 19.7 | 23.93 |
| PGSC0003DMT400056956 | Potato | nucleus | 25.84 | 23.24 |
| PGSC0003DMT400022426 | Potato | nucleus | 25.28 | 23.21 |
| KRH56393 | Soybean | cytosol | 24.54 | 22.49 |
| KRH62532 | Soybean | endoplasmic reticulum | 23.98 | 22.05 |
| CDX89333 | Canola | nucleus | 20.07 | 21.82 |
| Bra026434.1-P | Field mustard | nucleus | 19.89 | 21.62 |
| AT5G56210.1 | Thale cress | nucleus | 20.26 | 21.41 |
| CDX94330 | Canola | nucleus | 19.52 | 21.38 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 20.07 | 20.85 |
| CDY17403 | Canola | nucleus | 10.59 | 20.65 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 10.59 | 20.65 |
| AT4G26455.1 | Thale cress | nucleus | 18.03 | 19.84 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 9.85 | 19.0 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G135800.1 | EnsemblPlantsGene:TraesCS7B01G135800 | ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF4 | SEG:seg |
| TMHMM:TMhelix | MapMan:20.4.2.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:167006210..167008766
Molecular Weight (calculated)
58163.7 Da
IEP (calculated)
5.130
GRAVY (calculated)
-0.635
Length
538 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRMANGAVE SSAESLAAEA PPEARTKGRG LRRWRRIQRE HRAEGPAAPA TDAGGRGGAD DDAAQLHKRR LPLGPAAPPK GKHEVAVEKA ESSTASVESR
101: FVPLEQAPAP APAKLDPDLG LLVCSVGFSV GAGGADSDNS EDRSSKSSTA ASAPRHDFPR ERDRLRAHTA TSIHGKNHRT ARARADRQSA HTAFSVAKAK
201: ADNSRSSVES DRRSSNAIHG RKQGVGSIGN DIHKELSDGD DHSDEGQPSD EMRSTAGGYC RQSGSNVVGK LGGGNGDSGD ADVEDTCEEG GVVGKGEIGL
301: EMNSCANPYA ESILLLQRTQ EALENEIRNF VVIGKESTDD LDARNDEWSN SLHIEESVEE ANEKRKDLES RMEQASALIK EKDSRILELE ALSRTRAWRS
401: AIQSANNQLL QPDVDQLLQE KMEAEIQCII LTRASQTWTL VAEDRKALCE EQKCLLGDYK ELELKLRSAE NRAAILGEMV EKLEAQCKEL SASAEILQLQ
501: SRTSTASLLC FSQFILLLIA VGIYVMRLSP SSTELVPT
101: FVPLEQAPAP APAKLDPDLG LLVCSVGFSV GAGGADSDNS EDRSSKSSTA ASAPRHDFPR ERDRLRAHTA TSIHGKNHRT ARARADRQSA HTAFSVAKAK
201: ADNSRSSVES DRRSSNAIHG RKQGVGSIGN DIHKELSDGD DHSDEGQPSD EMRSTAGGYC RQSGSNVVGK LGGGNGDSGD ADVEDTCEEG GVVGKGEIGL
301: EMNSCANPYA ESILLLQRTQ EALENEIRNF VVIGKESTDD LDARNDEWSN SLHIEESVEE ANEKRKDLES RMEQASALIK EKDSRILELE ALSRTRAWRS
401: AIQSANNQLL QPDVDQLLQE KMEAEIQCII LTRASQTWTL VAEDRKALCE EQKCLLGDYK ELELKLRSAE NRAAILGEMV EKLEAQCKEL SASAEILQLQ
501: SRTSTASLLC FSQFILLLIA VGIYVMRLSP SSTELVPT
001: MFFFSCVCRI ISSTLIIFVD TASPGNNVGG FLRRTLNSLG FCFSCSSVTQ ASSRWIVLGM NESVPDSVED NGNSVPANGL LVLPDNDHEE GGVGSPQRSN
101: SVESPGGSVH STRKGFGLKK WRRIKRDGPV RDEAAPVDDG SKLLKRGLAG LVNPPSKHVE FSSVEARQSS EGSVGSVNMV HHPGVANGFS PDIGCMFAVG
201: QAFEKSEEHS GNTIGGKNVV GGKVVSGSQE KLWSDTIKRA SEERGDIEKE KPCSSLDSDL RSSDFVFSTG SVSVGNHGEK DERLTMNYIG GFSNEGQVKE
301: EVQTYSRSEN GNKEDDGESK KNNNHWADKD ALADSIRSFA VLQEVLWKEV QSFQELGKES VLLHSNTDEL SSDQPSHQNC KEDNSTSSGS KALILKEKVK
401: LLEHKLEEAR AALEAKEARI QELENSKIES ELECIFQRKI ETEIEHLMLT RSLSSLQVLQ ETKKLHSLKE DPVSNRGNIL GKTCKLGFYI LTQLILLVSI
501: LRFLVLQFSP ASRLVIPT
101: SVESPGGSVH STRKGFGLKK WRRIKRDGPV RDEAAPVDDG SKLLKRGLAG LVNPPSKHVE FSSVEARQSS EGSVGSVNMV HHPGVANGFS PDIGCMFAVG
201: QAFEKSEEHS GNTIGGKNVV GGKVVSGSQE KLWSDTIKRA SEERGDIEKE KPCSSLDSDL RSSDFVFSTG SVSVGNHGEK DERLTMNYIG GFSNEGQVKE
301: EVQTYSRSEN GNKEDDGESK KNNNHWADKD ALADSIRSFA VLQEVLWKEV QSFQELGKES VLLHSNTDEL SSDQPSHQNC KEDNSTSSGS KALILKEKVK
401: LLEHKLEEAR AALEAKEARI QELENSKIES ELECIFQRKI ETEIEHLMLT RSLSSLQVLQ ETKKLHSLKE DPVSNRGNIL GKTCKLGFYI LTQLILLVSI
501: LRFLVLQFSP ASRLVIPT
Arabidopsis Description
WIP3WPP domain interacting protein 3 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSR4]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.