Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G266900.1 | Wheat | plastid | 93.82 | 93.65 |
| TraesCS1D01G255600.1 | Wheat | cytosol, plastid | 93.27 | 92.43 |
| Os05t0543200-01 | Rice | plasma membrane | 85.64 | 86.58 |
| EES05430 | Sorghum | cytosol, nucleus, plastid | 82.73 | 83.79 |
| TraesCS3A01G400100.1 | Wheat | plastid | 88.18 | 82.34 |
| Zm00001d051112_P001 | Maize | plasma membrane | 76.73 | 81.78 |
| EES05435 | Sorghum | cytosol, plastid | 82.18 | 81.0 |
| Zm00001d017239_P001 | Maize | mitochondrion, plasma membrane | 75.64 | 79.54 |
| HORVU1Hr1G063300.3 | Barley | plastid | 94.18 | 79.33 |
| EES07543 | Sorghum | cytosol | 35.45 | 77.69 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 68.0 | 68.25 |
| VIT_07s0104g00520.t01 | Wine grape | plastid | 67.09 | 68.21 |
| KRH71426 | Soybean | nucleus | 64.0 | 66.04 |
| VIT_05s0020g02970.t01 | Wine grape | cytosol, plastid | 64.36 | 65.68 |
| Solyc09g065190.1.1 | Tomato | plastid | 63.45 | 65.36 |
| KRH32020 | Soybean | cytosol | 63.45 | 65.36 |
| PGSC0003DMT400086322 | Potato | cytosol | 63.27 | 65.17 |
| KRG91256 | Soybean | endoplasmic reticulum | 61.27 | 63.35 |
| VIT_19s0014g03800.t01 | Wine grape | cytosol, plastid | 60.55 | 63.31 |
| AT5G19320.1 | Thale cress | cytosol | 62.36 | 62.94 |
| KRH35557 | Soybean | endoplasmic reticulum, nucleus | 60.73 | 62.66 |
| Solyc01g079680.2.1 | Tomato | plastid | 62.55 | 62.55 |
| PGSC0003DMT400023310 | Potato | plastid | 62.18 | 61.84 |
| CDX92540 | Canola | cytosol | 62.55 | 61.43 |
| AT3G63130.1 | Thale cress | plastid | 59.27 | 60.93 |
| CDY56462 | Canola | cytosol, plastid | 59.09 | 60.75 |
| Bra007730.1-P | Field mustard | cytosol, plastid | 58.91 | 60.56 |
| Zm00001d034691_P001 | Maize | cytosol | 41.82 | 60.53 |
| Os05t0409200-00 | Rice | cytosol | 11.64 | 59.81 |
| CDX93931 | Canola | cytosol | 36.73 | 59.76 |
| Bra040432.1-P | Field mustard | plastid | 57.09 | 58.58 |
| Zm00001d052426_P001 | Maize | cytosol | 14.55 | 58.39 |
| CDX89174 | Canola | plastid | 57.09 | 58.26 |
| CDY16082 | Canola | cytosol | 11.64 | 56.64 |
| CDY02566 | Canola | cytosol | 20.36 | 56.57 |
| CDX76683 | Canola | mitochondrion | 58.73 | 54.75 |
| Bra026911.1-P | Field mustard | cytosol | 12.55 | 52.27 |
| Bra013834.1-P | Field mustard | cytosol | 12.36 | 51.52 |
| CDX93932 | Canola | cytosol | 10.73 | 51.3 |
| GSMUA_Achr8P13660_001 | Banana | cytosol | 53.64 | 48.2 |
| Bra020034.1-P | Field mustard | cytosol | 19.82 | 44.31 |
| CDY44911 | Canola | cytosol | 19.82 | 43.43 |
| AT3G06000.1 | Thale cress | cytosol | 15.09 | 39.34 |
| Zm00001d043604_P002 | Maize | cytosol | 36.73 | 37.62 |
| CDY27720 | Canola | cytosol, mitochondrion | 16.0 | 36.21 |
| Bra020788.1-P | Field mustard | cytosol, mitochondrion | 15.45 | 36.02 |
| Zm00001d046105_P001 | Maize | peroxisome | 37.45 | 35.03 |
| CDY05221 | Canola | cytosol, mitochondrion, nucleus, plastid | 10.91 | 31.41 |
| TraesCS7A01G194400.1 | Wheat | plastid | 16.0 | 14.31 |
Protein Annotations
| Gene3D:1.10.246.200 | MapMan:23.5.1.5 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:IPR038214 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PFAM:PF13516 |
| PFAM:PF13943 | PANTHER:PTHR24106 | PANTHER:PTHR24106:SF248 | SMART:SM00368 | SUPFAM:SSF52047 | EnsemblPlantsGene:TraesCS1A01G256200 |
| EnsemblPlants:TraesCS1A01G256200.1 | InterPro:WPP_dom | InterPro:WPP_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1A:+:448913739..448915391
Molecular Weight (calculated)
59554.4 Da
IEP (calculated)
4.340
GRAVY (calculated)
-0.354
Length
550 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSTAQDFQP RTFSIKLWPP SESTRLMLIE RMTKNLSAEC IFSRKYGILS KEEAHENAKR IEGACFASAE EHFKKEPDGD GSSAVQLYAK ETSKLMLEVL
101: KKGPRTTEPE APVVDTPLEP ADTVFDISGG KRAFIEAEEA KELLSPLTKP GNSYKRICFS NRSFGIGAAN VAGPILESIK SQLTEVDISD FVAGRPEDEA
201: LDVMRIFSKA LAGCVLRYLN ISDNALGEKG VRAFTELLKS QGDLEELYVM NDGISGEAAK ALSELIPSTE KLKVLHFHNN MTGDEGAMSI AEMVKRSPNL
301: ESFRCSATRI GSDGGVALAE ALGTCTRLKK LDIRDNLFGV EAGVALSKTL PKLGGLVELY LSDLNLENEG TIAIVNVLKQ SAPQLEVLEM AGNEITAKAA
401: KAVAECLTAM QSLKKLTLAE NELKDDGAVT IAKSLQEGHP GLKELDVSTN LFQRSGARCF AQAVANKPGF VLLNINSNFI SDEGVDEVKE ILKGGKNSLE
501: VLGPLDENDP EGDPEDDEEE EDDDEEERDG DDNGDGLGSK LQGLKVEEED
101: KKGPRTTEPE APVVDTPLEP ADTVFDISGG KRAFIEAEEA KELLSPLTKP GNSYKRICFS NRSFGIGAAN VAGPILESIK SQLTEVDISD FVAGRPEDEA
201: LDVMRIFSKA LAGCVLRYLN ISDNALGEKG VRAFTELLKS QGDLEELYVM NDGISGEAAK ALSELIPSTE KLKVLHFHNN MTGDEGAMSI AEMVKRSPNL
301: ESFRCSATRI GSDGGVALAE ALGTCTRLKK LDIRDNLFGV EAGVALSKTL PKLGGLVELY LSDLNLENEG TIAIVNVLKQ SAPQLEVLEM AGNEITAKAA
401: KAVAECLTAM QSLKKLTLAE NELKDDGAVT IAKSLQEGHP GLKELDVSTN LFQRSGARCF AQAVANKPGF VLLNINSNFI SDEGVDEVKE ILKGGKNSLE
501: VLGPLDENDP EGDPEDDEEE EDDDEEERDG DDNGDGLGSK LQGLKVEEED
001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE
Arabidopsis Description
RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.