Factsheet for VIT_05s0020g02970.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0083g00730.t01
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19320.1	VIT_19s0015g01790.t01	AT4G26455.1	17600715
AT5G19320.1	VIT_14s0083g00730.t01	AT5G11390.1	18591351
AT5G19320.1	VIT_19s0015g01790.t01	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	93.51	95.82
VIT_07s0104g00520.t01	Wine grape	plastid	75.7	75.42
KRG91256	Soybean	endoplasmic reticulum	72.91	73.87
KRH35557	Soybean	endoplasmic reticulum, nucleus	71.61	72.42
AT5G19320.1	Thale cress	cytosol	70.87	70.09
Solyc01g079680.2.1	Tomato	plastid	70.87	69.45
PGSC0003DMT400023310	Potato	plastid	70.5	68.72
CDX92540	Canola	cytosol	69.02	66.43
Os05t0543200-01	Rice	plasma membrane	66.79	66.18
GSMUA_Achr11P...	Banana	cytosol, plastid	66.42	65.33
EES05430	Sorghum	cytosol, nucleus, plastid	65.12	64.64
TraesCS1B01G266900.1	Wheat	plastid	65.86	64.43
TraesCS1A01G256200.1	Wheat	cytosol	65.68	64.36
CDY16082	Canola	cytosol	13.36	63.72
TraesCS1D01G255600.1	Wheat	cytosol, plastid	65.49	63.6
Zm00001d051112_P001	Maize	plasma membrane	60.85	63.57
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	61.6	63.48
EES05435	Sorghum	cytosol, plastid	65.49	63.26
TraesCS3D01G394300.1	Wheat	cytosol, plastid	64.56	62.82
TraesCS3B01G433100.1	Wheat	cytosol, plastid	64.38	62.64
EES07543	Sorghum	cytosol	29.13	62.55
HORVU3Hr1G090080.1	Barley	plastid	63.27	61.55
Bra026911.1-P	Field mustard	cytosol	14.84	60.61
CDY02566	Canola	cytosol	22.26	60.61
TraesCS3A01G400100.1	Wheat	plastid	64.19	58.74
HORVU1Hr1G063300.3	Barley	plastid	66.23	54.67
Zm00001d052426_P001	Maize	cytosol	12.62	49.63
Zm00001d034691_P001	Maize	cytosol	33.21	47.11
GSMUA_Achr8P13660_001	Banana	cytosol	50.46	44.44
AT3G06000.1	Thale cress	cytosol	16.88	43.13
Os05t0409200-00	Rice	cytosol	8.35	42.06
Bra020788.1-P	Field mustard	cytosol, mitochondrion	16.14	36.86
CDY27720	Canola	cytosol, mitochondrion	16.14	35.8
Zm00001d043604_P002	Maize	cytosol	30.61	30.73
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	10.76	30.37
Zm00001d046105_P001	Maize	peroxisome	31.35	28.74
VIT_01s0026g00610.t01	Wine grape	mitochondrion	16.7	18.0

Protein Annotations

Gene3D:1.10.246.200	EntrezGene:100259658	wikigene:100259658	MapMan:23.5.1.5	Gene3D:3.80.10.10	EMBL:AM433721
ProteinID:CAN75983	ProteinID:CAN75983.1	ProteinID:CCB50398	ProteinID:CCB50398.1	UniProt:F6HDM7	EMBL:FN595749
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:IPR038214
EntrezGene:LOC100259658	wikigene:LOC100259658	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF13516	PFAM:PF13943
PANTHER:PTHR24106	PANTHER:PTHR24106:SF248	SMART:SM00368	SUPFAM:SSF52047	UniParc:UPI00015C7515	ArrayExpress:VIT_05s0020g02970
EnsemblPlantsGene:VIT_05s0020g02970	EnsemblPlants:VIT_05s0020g02970.t01	unigene:Vvi.14476	InterPro:WPP_dom	InterPro:WPP_sf	RefSeq:XP_002281311
RefSeq:XP_002281311.1	RefSeq:XP_010649879.1	RefSeq:XP_010649881.1	RefSeq:XP_019075495.1	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:4728395..4730152

Molecular Weight (calculated)

58554.0 Da

IEP (calculated)

4.304

GRAVY (calculated)

-0.315

Length

539 amino acids

Sequence
(BLAST)

001: MDTTTMNPEG RAFSIKLWPP SQTTRLLLVE RMANNLSTPS IFTRKYGSLS KEEARENAKQ IEEVAFSTAN QHYEKEPDGD GGSAVQLYAK ECSKLILEVL
101: KRGPITKVDG EEPTSKTFNE ACETVFDISK GQRAFVEAEE AEELLRPLKE PGNSYTKICF SNRSFGLGAA RVAEPILASL KDQLKEVDLS DFIAGRSEGE
201: ALEVMAIFSE ALEGCVLKSL DLSNNALGEK GVRAFGALLK SQSSLEELYL MNDGISEEAA RAVCELIPST EKLRVLQFHN NMTGDEGALA ISEVVKQSPM
301: LEDFRCSSTR IGSDGGVALS EALQTFTNLK KLDLRDNMFG VEAGVALSKA LAKHADLTEA YLSYLNLEDE GAVAIANVLK ESASALEVME MAGNDITAEA
401: APALAACIAA KQLITKLNLA ENELRDEGAI QISKALEDGH AQLKEVDLSS NFMRRAGARC LARAVVHKPG LKLLNINGNF ISDEGIDEVK SIFNEFPNVL
501: GSLDENDPEG EDDNESGEGE DEGDELESKL KNLEVHQED

Best Arabidopsis Sequence Match ( AT5G19320.2 )
(BLAST)

001: MADILDSRPH AFSIKLWPPS LPTRKALIER ITNNFSSKTI FTEKYGSLTK DQATENAKRI EDIAFSTANQ QFEREPDGDG GSAVQLYAKE CSKLILEVLK
101: KGPVAKVAAR ELISEDSVSP RETFFDISKG KRAFIEAEEA EELLKPLKEP GNAYTKICFS NRSFGLGAAR VAEPILASLK DQLKEVDLSD FVAGRPELEA
201: LEVMNIFSDA LQGSILSSLN LSDNALGEKG VRAFGALLKS LSSLEELYLM NDGISKEAAQ AVSELIPSTE NLRVLHFHNN MTGDEGALAI AEVVKRSPLL
301: ENFRCSSTRV GSKGGIALSE ALEHCTHMEK LDLRDNMFGT EAGVSLSKTL SSFKHMTELY LSYLNLEDEG AIAIVNALKE SASPIEVLEM AGNDITVEAA
401: SAIAACVAAK QDLNKLNLSE NELKDEGCVQ IANCIEEGHS KLQYIDMSTN YIRRAGARAL AHVVVKKEAF KLLNIDGNII SEEGIEELKE IFKKSPELLG
501: ALDENDPDGE EDDDDEEDEE DEENEGNGNG ELESKLKNLE VNQED

Arabidopsis Description

RANGAP2RANGAP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UQD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.