Factsheet for VIT_01s0026g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69472	Soybean	nucleus	78.8	65.02
CDY20626	Canola	plastid	77.6	64.99
AT1G10510.1	Thale cress	plastid	78.2	64.63
Bra018435.1-P	Field mustard	plastid	77.2	64.55
KRH74682	Soybean	plastid	77.2	63.7
CDY20954	Canola	plastid	76.6	63.62
CDY55048	Canola	plastid	75.2	62.98
CDX93413	Canola	plastid	75.0	62.81
Bra019926.1-P	Field mustard	plastid	75.0	62.81
PGSC0003DMT400040302	Potato	plastid	76.2	62.56
Solyc05g006170.2.1	Tomato	plastid	76.0	62.3
GSMUA_Achr9P28160_001	Banana	plastid	76.6	62.07
Os06t0237502-00	Rice	plastid	67.0	54.56
TraesCS7D01G196000.1	Wheat	plastid	66.4	54.07
TraesCS7A01G194400.1	Wheat	plastid	66.0	53.66
TraesCS7B01G100000.1	Wheat	plastid	65.4	53.34
HORVU7Hr1G039610.2	Barley	cytosol, peroxisome, plastid	66.4	52.45
Zm00001d044774_P004	Maize	plastid	64.0	49.31
KXG19681	Sorghum	plastid	64.0	48.63
VIT_07s0104g00520.t01	Wine grape	plastid	19.0	17.56
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	18.0	17.11
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	18.0	16.7

Protein Annotations

EntrezGene:100258814	wikigene:100258814	Gene3D:3.80.10.10	MapMan:35.1	ProteinID:CCB56636	ProteinID:CCB56636.1
UniProt:F6HPK8	EMBL:FN596002	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0009507	GO:GO:0009536
GO:GO:0009941	InterPro:IPR001611	InterPro:IPR032675	EntrezGene:LOC100258814	wikigene:LOC100258814	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	PFAM:PF13516	SMART:SM00368	SUPFAM:SSF52047	TIGR:TC59524	UniParc:UPI0002108842
ArrayExpress:VIT_01s0026g00610	EnsemblPlantsGene:VIT_01s0026g00610	EnsemblPlants:VIT_01s0026g00610.t01	unigene:Vvi.4350	RefSeq:XP_002266381	RefSeq:XP_002266381.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:9372165..9379714

Molecular Weight (calculated)

53587.2 Da

IEP (calculated)

6.337

GRAVY (calculated)

-0.088

Length

500 amino acids

Sequence
(BLAST)

001: MAVLWRLVEK ILLPKSSRSS SLEKKSSSPG VKWSFAPGTN LLAGLTAKFD RESKQKLNEF AKEIRSFGSV DMSGRNFGDE GLFFLAESLA YNQNAEEVSF
101: AANGITAAGL KAFDGVLQSN IVLKTLDLSG NPIGDEGAKC LCDILIDNAG IQKLQLNSAD LGDEGAKAIA EMLKKNSSLR IVELNNNMID YSGFTSLGGA
201: LLENNTIRNI HLNGNYGGAL GVAALAKGLE ANKSLRELHL HGNSIGDEGV RVLMSGLSSH KGKLTLLDIG NNEISSRGAF HVAEYIKKAK SLLWLNLYMN
301: DIGDEGAEKI ADALKENRSI ATIDLGGNNI HAKGVSKIAG VLKDNTVITT LELGYNPIGP EGAKALSEVL KFHGKIKTLK LGWCQIGAKG AEFIADTLKY
401: NTTISTLDLR ANGLRDEGAV CLARSMKVVN EALASLDLGF NEIRDEGAFA IAQALKANED VAVTSLNLAS NFLTKFGQSA LTDARDHVYE MSEKEVNIFF

Best Arabidopsis Sequence Match ( AT1G10510.1 )
(BLAST)

001: MASSSTSSLN LHSLPKASSG LGQWKSGFRY ELLGSSVSRN RLFVSPVVIH HRSPRLPAIK AAYNSDGGSK RSRVYKESQA ASGFPNAKVQ QIASSVLPLG
101: SFAVVTFVLW KVVGKFMSPK SPKTSAGENN SSTQGVKWSI GAGTNLLQGF AAKVDREAKQ RLNEFAKELR SFRSVDMSGC NFGDEGLFFL AESLGYNQTV
201: EEVSFSANGI TAAGVKAFDG VLQSNIMLKI LNLSGNPIGD EGAKTLCATL MENSSIEILQ LNSTDIGDEG AKEIAELLKR NSTLRIIELN NNMIDYSGFT
301: SLAGALLENN TIRNLHLNGN YGGALGANAL AKGLEGNKSL RELHLHGNSI GDEGTRALMA GLSSHKGKVA LLDLGNNSIS AKGAFYVAEY IKRSKSLVWL
401: NLYMNDIGDE GAEKIADSLK QNRSIATIDL GGNNIHAEGV NAIAQALKDN AIITTLEVGY NPIGPDGAKA LSEILKFHGN VKTLKLGWCQ IAAKGAEHVA
501: DMLRYNNTIS VLDLRANGLR DEGASCLARS LKVVNEALTS VDLGFNEIRD DGAFAIAQAL KANEDVTVTS INLGNNFITK FGQSALTDAR DHVLEMTEKE
601: VEIFF

Arabidopsis Description

emb2004RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93ZV8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.