Factsheet for VIT_07s0104g00520.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086322	Potato	cytosol	74.86	75.84
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	75.42	75.7
Solyc09g065190.1.1	Tomato	plastid	74.68	75.66
KRH71426	Soybean	nucleus	74.12	75.23
KRH32020	Soybean	cytosol	74.12	75.09
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	70.98	73.0
GSMUA_Achr11P...	Banana	cytosol, plastid	69.5	68.61
Os05t0543200-01	Rice	plasma membrane	68.58	68.2
TraesCS1A01G256200.1	Wheat	cytosol	68.21	67.09
TraesCS1B01G266900.1	Wheat	plastid	67.84	66.61
EES05430	Sorghum	cytosol, nucleus, plastid	66.17	65.93
TraesCS3B01G433100.1	Wheat	cytosol, plastid	66.73	65.16
TraesCS3D01G394300.1	Wheat	cytosol, plastid	66.73	65.16
TraesCS1D01G255600.1	Wheat	cytosol, plastid	66.73	65.05
EES05435	Sorghum	cytosol, plastid	66.54	64.52
HORVU3Hr1G090080.1	Barley	plastid	65.8	64.26
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	62.11	64.24
Zm00001d051112_P001	Maize	plasma membrane	60.07	62.98
EES07543	Sorghum	cytosol	28.65	61.75
TraesCS3A01G400100.1	Wheat	plastid	65.99	60.61
HORVU1Hr1G063300.3	Barley	plastid	68.39	56.66
Zm00001d052426_P001	Maize	cytosol	13.49	53.28
Zm00001d034691_P001	Maize	cytosol	34.2	48.68
GSMUA_Achr8P13660_001	Banana	cytosol	53.6	47.39
Bra020034.1-P	Field mustard	cytosol	20.15	44.31
CDY44911	Canola	cytosol	20.15	43.43
Os05t0409200-00	Rice	cytosol	8.5	42.99
Zm00001d043604_P002	Maize	cytosol	31.98	32.22
Zm00001d046105_P001	Maize	peroxisome	33.09	30.44
VIT_01s0026g00610.t01	Wine grape	mitochondrion	17.56	19.0

Protein Annotations

Gene3D:1.10.246.200	EntrezGene:100244330	wikigene:100244330	MapMan:23.5.1.5	Gene3D:3.80.10.10	EMBL:AM438596
ProteinID:CAN73875	ProteinID:CAN73875.1	ProteinID:CCB56815	ProteinID:CCB56815.1	ncoils:Coil	UniProt:F6HQ59
EMBL:FN596005	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675
InterPro:IPR038214	EntrezGene:LOC100244330	wikigene:LOC100244330	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF13516
PFAM:PF13943	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248	SMART:SM00368	SUPFAM:SSF52047	UniParc:UPI00015CB0A2
ArrayExpress:VIT_07s0104g00520	EnsemblPlantsGene:VIT_07s0104g00520	EnsemblPlants:VIT_07s0104g00520.t01	unigene:Vvi.12487	InterPro:WPP_dom	InterPro:WPP_sf
RefSeq:XP_002274973	RefSeq:XP_002274973.1	RefSeq:XP_002275003	RefSeq:XP_002275003.1	RefSeq:XP_010652115.1	SEG:seg

Description

No Description!

Coordinates

chr7:-:1748517..1750382

Molecular Weight (calculated)

59283.0 Da

IEP (calculated)

4.309

GRAVY (calculated)

-0.374

Length

541 amino acids

Sequence
(BLAST)

001: MDSTAQNFQH RKMSIKLWPP SQSTRLMLVE RMTKNLTTPS ILSRKYGLLM REEAEEYAKE IEDAAFATAN QHYEKEPDGD GSSAVQLYAK ESSKLMLEIL
101: KRGPKTKEDG EVMTAEQTTS PLETVFDISG GRRAFIDAEE AEELLKPLKE PGNSYNRICF SNRSFGIDAA YVTEPILSSL KDQLMEVDLS DFIAGRPEAE
201: ALDVMNIFSS ALEGCVLKYL NLSNNALGEK GVRAFGALLK SQNNLEELYL MNDGISEEAA RAVCELIPST EKLRILQFHN NMTGDEGAIA ISEMVKRSPA
301: LEDFRCSSTR VDSEGGVALA KALGTCTRLK KLDLRDNMFG VEAGVALSKA LSAFKDLTEV YLSYLNLEDE GAKAIANALK ESTPSLEVLE MAGNDITVEA
401: ASTLAACIAA KQCLAKLSLA ENELKDEGAI LISKALEEGH NQLTEVDLNT NSIRRAGARF LAQTVASKPG FKLLNINGNF ISDEGIDEVK DIFKNCPDVL
501: GPLDENDPEG EDNDGEDEEE GAADNEDELE SKLKRLDIKN E

Best Arabidopsis Sequence Match ( AT3G63130.2 )
(BLAST)

001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE

Arabidopsis Description

RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.