Factsheet for Solyc09g065190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086322	Potato	cytosol	98.5	98.5
VIT_07s0104g00520.t01	Wine grape	plastid	75.66	74.68
KRH71426	Soybean	nucleus	69.85	69.98
KRH32020	Soybean	cytosol	69.85	69.85
Solyc01g079680.2.1	Tomato	plastid	67.79	65.82
GSMUA_Achr11P...	Banana	cytosol, plastid	67.23	65.51
Os05t0543200-01	Rice	plasma membrane	65.73	64.52
TraesCS1B01G266900.1	Wheat	plastid	65.54	63.52
TraesCS1A01G256200.1	Wheat	cytosol	65.36	63.45
TraesCS1D01G255600.1	Wheat	cytosol, plastid	64.98	62.52
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	61.05	62.33
EES05430	Sorghum	cytosol, nucleus, plastid	63.3	62.25
Zm00001d051112_P001	Maize	plasma membrane	60.11	62.21
EES07543	Sorghum	cytosol	29.03	61.75
EES05435	Sorghum	cytosol, plastid	63.67	60.93
TraesCS3D01G394300.1	Wheat	cytosol, plastid	63.11	60.83
TraesCS3B01G433100.1	Wheat	cytosol, plastid	63.11	60.83
HORVU3Hr1G090080.1	Barley	plastid	62.73	60.47
TraesCS3A01G400100.1	Wheat	plastid	62.73	56.88
Zm00001d052426_P001	Maize	cytosol	14.23	55.47
HORVU1Hr1G063300.3	Barley	plastid	65.36	53.45
Zm00001d034691_P001	Maize	cytosol	33.15	46.58
GSMUA_Achr8P13660_001	Banana	cytosol	52.81	46.08
Os05t0409200-00	Rice	cytosol	8.8	43.93
Bra020034.1-P	Field mustard	cytosol	19.1	41.46
CDY44911	Canola	cytosol	19.1	40.64
Zm00001d043604_P002	Maize	cytosol	32.21	32.03
Zm00001d046105_P001	Maize	peroxisome	32.21	29.25
Solyc05g006170.2.1	Tomato	plastid	17.98	15.74

Protein Annotations

Gene3D:1.10.246.200	MapMan:23.5.1.5	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:IPR038214	UniProt:K4CUE6	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
PFAM:PF13516	PFAM:PF13943	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248	SMART:SM00368	SUPFAM:SSF52047
EnsemblPlantsGene:Solyc09g065190.1	EnsemblPlants:Solyc09g065190.1.1	UniParc:UPI000276C515	InterPro:WPP_dom	InterPro:WPP_sf	SEG:seg

Description

RAN GTPase-activating protein 1 [Source:Projected from Arabidopsis thaliana (AT3G63130) UniProtKB/Swiss-Prot;Acc:Q9LE82]

Coordinates

chr9:-:63111331..63112935

Molecular Weight (calculated)

58071.5 Da

IEP (calculated)

4.311

GRAVY (calculated)

-0.318

Length

534 amino acids

Sequence
(BLAST)

001: MDSAGFSMKL WPPSSSTRLM LVERMTKNLI TPSILSRKYG LLSKEEAEED AKQIEALAFD SANQHFDKEP DGDGSSAVQL YAKESSKLML EVIKRGPQTK
101: ESAEGIVSEK VKASNETTIF DISKGRRDFI SAEEASELLK PLSEPGNNYK RICFSNRSFG GDAAKIAGPI LSSLKDQLTE VDLSDFVAGR PEEEALEVME
201: IFSSALDACD LRYLDLSNNA LGEKGIRAFG ALLKSQKNLE ELYLMNDGIS EEAAEAVCEL IPSTDKLRIL HFHNNMTGDE GALSISKLVK HSPALEDFRC
301: SSTRVGSEGG VALSQALGEC RNLKKVDLRD NMFGVEAGIA LSKVLSIFSG LTEIYLSYLN LEDEGSIALA NVLRESAPSL EVLEMDGNDI TAKAAPALAA
401: CIAAKQFLTT LKLGENELKD EGAILIAKAL EDGHGQLTEV DMSTNAIRRA GARCLAQAVV NKPGFKVLNI NGNFISDEGI DEVKDIFKNS LHVLGPLDDN
501: DPEGEDYDEE ADEGGDNEND LETRLKDLDI KQEE

Best Arabidopsis Sequence Match ( AT3G63130.2 )
(BLAST)

001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE

Arabidopsis Description

RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.