Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05430 | Sorghum | cytosol, nucleus, plastid | 86.95 | 87.11 |
| TraesCS1A01G256200.1 | Wheat | cytosol | 86.58 | 85.64 |
| Zm00001d051112_P001 | Maize | plasma membrane | 80.7 | 85.08 |
| TraesCS1B01G266900.1 | Wheat | plastid | 86.03 | 84.94 |
| EES05435 | Sorghum | cytosol, plastid | 85.66 | 83.51 |
| TraesCS1D01G255600.1 | Wheat | cytosol, plastid | 84.93 | 83.24 |
| TraesCS3D01G394300.1 | Wheat | cytosol, plastid | 84.56 | 83.03 |
| TraesCS3B01G433100.1 | Wheat | cytosol, plastid | 84.19 | 82.67 |
| Zm00001d017239_P001 | Maize | mitochondrion, plasma membrane | 79.23 | 82.41 |
| HORVU3Hr1G090080.1 | Barley | plastid | 83.64 | 82.13 |
| EES07543 | Sorghum | cytosol | 37.13 | 80.48 |
| TraesCS3A01G400100.1 | Wheat | plastid | 83.09 | 76.74 |
| HORVU1Hr1G063300.3 | Barley | plastid | 86.4 | 71.98 |
| VIT_07s0104g00520.t01 | Wine grape | plastid | 68.2 | 68.58 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 68.93 | 68.43 |
| VIT_05s0020g02970.t01 | Wine grape | cytosol, plastid | 66.18 | 66.79 |
| Os05t0409200-00 | Rice | cytosol | 13.05 | 66.36 |
| PGSC0003DMT400086322 | Potato | cytosol | 64.71 | 65.92 |
| KRH71426 | Soybean | nucleus | 64.52 | 65.85 |
| Solyc09g065190.1.1 | Tomato | plastid | 64.52 | 65.73 |
| KRH32020 | Soybean | cytosol | 63.6 | 64.79 |
| VIT_19s0014g03800.t01 | Wine grape | cytosol, plastid | 62.5 | 64.64 |
| KRG91256 | Soybean | endoplasmic reticulum | 62.5 | 63.91 |
| KRH35557 | Soybean | endoplasmic reticulum, nucleus | 62.32 | 63.6 |
| AT3G63130.1 | Thale cress | plastid | 61.76 | 62.8 |
| Zm00001d052426_P001 | Maize | cytosol | 15.81 | 62.77 |
| CDY56462 | Canola | cytosol, plastid | 60.85 | 61.87 |
| Solyc01g079680.2.1 | Tomato | plastid | 62.5 | 61.82 |
| Bra007730.1-P | Field mustard | cytosol, plastid | 60.48 | 61.5 |
| AT5G19320.1 | Thale cress | cytosol | 61.21 | 61.1 |
| CDX93931 | Canola | cytosol | 37.87 | 60.95 |
| Zm00001d034691_P001 | Maize | cytosol | 42.46 | 60.79 |
| Bra040432.1-P | Field mustard | plastid | 59.19 | 60.07 |
| PGSC0003DMT400023310 | Potato | plastid | 61.03 | 60.04 |
| CDX89174 | Canola | plastid | 59.38 | 59.93 |
| CDX92540 | Canola | cytosol | 61.58 | 59.82 |
| CDX76683 | Canola | mitochondrion | 60.85 | 56.1 |
| CDY16082 | Canola | cytosol | 11.4 | 54.87 |
| CDY02566 | Canola | cytosol | 19.67 | 54.04 |
| CDX93932 | Canola | cytosol | 11.4 | 53.91 |
| Bra013834.1-P | Field mustard | cytosol | 13.05 | 53.79 |
| Bra026911.1-P | Field mustard | cytosol | 12.32 | 50.76 |
| GSMUA_Achr8P13660_001 | Banana | cytosol | 53.12 | 47.22 |
| Bra020034.1-P | Field mustard | cytosol | 19.67 | 43.5 |
| CDY44911 | Canola | cytosol | 19.67 | 42.63 |
| AT3G06000.1 | Thale cress | cytosol | 15.99 | 41.23 |
| Zm00001d043604_P002 | Maize | cytosol | 36.76 | 37.24 |
| Bra020788.1-P | Field mustard | cytosol, mitochondrion | 15.26 | 35.17 |
| Zm00001d046105_P001 | Maize | peroxisome | 36.95 | 34.18 |
| CDY27720 | Canola | cytosol, mitochondrion | 15.26 | 34.16 |
| CDY05221 | Canola | cytosol, mitochondrion, nucleus, plastid | 10.11 | 28.8 |
| Os06t0237502-00 | Rice | plastid | 17.83 | 15.8 |
Protein Annotations
| Gene3D:1.10.246.200 | MapMan:23.5.1.5 | Gene3D:3.80.10.10 | EntrezGene:4339487 | ProteinID:AAU43996.1 | EMBL:AK242655 |
| ProteinID:BAF18116.1 | ProteinID:BAS95149.1 | ProteinID:EEE64557.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:IPR038214 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | EnsemblPlantsGene:Os05g0543200 |
| EnsemblPlants:Os05t0543200-01 | PFAM:PF13516 | PFAM:PF13943 | PANTHER:PTHR24106 | PANTHER:PTHR24106:SF248 | UniProt:Q65XN1 |
| SMART:SM00368 | SUPFAM:SSF52047 | UniParc:UPI000043F3FD | InterPro:WPP_dom | InterPro:WPP_sf | RefSeq:XP_015640153.1 |
| SEG:seg | : | : | : | : | : |
Description
Similar to Ran GTPase activating protein. (Os05t0543200-01)
Coordinates
chr5:+:26958516..26961422
Molecular Weight (calculated)
59639.4 Da
IEP (calculated)
4.240
GRAVY (calculated)
-0.382
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSTKQDFQP RTFSIKLWPP SESTRLMLVE RMTKNLSTES IFSRKYGLLG KEEAHDNAKR IEEVCFASAD EHFKEEPDGD GSSAVQLYAK ETSKLMLEVL
101: KRGPRTTVEP EVPVADTPLE PADSVFDISG GKRAFIEADE AKELLSPLIK PGNAYKRICF SNRSFGIGAA NVAGPILESI KKQLTEVDIS DFVAGRPEDE
201: ALDVMRIFSK ALEGAVLRYL NISDNALGEK GVRAFEELLK SQDNLEELYV MNDGISEEAA QALSELIPST EKLKILHFHN NMTGDEGAMF IAEMVKRSPN
301: LESFRCSATR IGSDGGVALA EALGTCTRLK KLDLRDNLFG VEAGLALSKT LSKLPDLVEL YLSDLNLENK GTVAIINTLK QSAPQLEVLE MAGNEINAKA
401: SQALAECLTA MQSLKKLTLA ENELKDDGAV VIAKSLEDGH QDLKELDVST NMLQRVGARC FAQAIANKPG FVQLNINGNF ISDEGIDEVK DILKSGENSV
501: EVLGPLDEND PEGEAEDDEE EEEEEEDDGE LDSKLQSLKV EQDD
101: KRGPRTTVEP EVPVADTPLE PADSVFDISG GKRAFIEADE AKELLSPLIK PGNAYKRICF SNRSFGIGAA NVAGPILESI KKQLTEVDIS DFVAGRPEDE
201: ALDVMRIFSK ALEGAVLRYL NISDNALGEK GVRAFEELLK SQDNLEELYV MNDGISEEAA QALSELIPST EKLKILHFHN NMTGDEGAMF IAEMVKRSPN
301: LESFRCSATR IGSDGGVALA EALGTCTRLK KLDLRDNLFG VEAGLALSKT LSKLPDLVEL YLSDLNLENK GTVAIINTLK QSAPQLEVLE MAGNEINAKA
401: SQALAECLTA MQSLKKLTLA ENELKDDGAV VIAKSLEDGH QDLKELDVST NMLQRVGARC FAQAIANKPG FVQLNINGNF ISDEGIDEVK DILKSGENSV
501: EVLGPLDEND PEGEAEDDEE EEEEEEDDGE LDSKLQSLKV EQDD
001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE
Arabidopsis Description
RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.