Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d052426_P001 | Maize | cytosol | 46.96 | 39.42 |
| CDX89174 | Canola | plastid | 78.26 | 16.7 |
| CDY56462 | Canola | cytosol, plastid | 66.96 | 14.39 |
| AT3G63130.1 | Thale cress | plastid | 66.09 | 14.21 |
| CDX76683 | Canola | mitochondrion | 71.3 | 13.9 |
| EES05430 | Sorghum | cytosol, nucleus, plastid | 56.52 | 11.97 |
| Os05t0543200-01 | Rice | plasma membrane | 53.91 | 11.4 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 53.91 | 11.31 |
| EES05435 | Sorghum | cytosol, plastid | 53.91 | 11.11 |
| TraesCS1B01G266900.1 | Wheat | plastid | 53.04 | 11.07 |
| TraesCS3D01G394300.1 | Wheat | cytosol, plastid | 53.04 | 11.01 |
| HORVU3Hr1G090080.1 | Barley | plastid | 53.04 | 11.01 |
| TraesCS1D01G255600.1 | Wheat | cytosol, plastid | 53.04 | 10.99 |
| TraesCS3B01G433100.1 | Wheat | cytosol, plastid | 52.17 | 10.83 |
| TraesCS1A01G256200.1 | Wheat | cytosol | 51.3 | 10.73 |
| CDX92540 | Canola | cytosol | 52.17 | 10.71 |
| TraesCS3A01G400100.1 | Wheat | plastid | 53.04 | 10.36 |
| Zm00001d051112_P001 | Maize | plasma membrane | 46.09 | 10.27 |
| GSMUA_Achr8P13660_001 | Banana | cytosol | 53.91 | 10.13 |
| Zm00001d017239_P001 | Maize | mitochondrion, plasma membrane | 45.22 | 9.94 |
| HORVU1Hr1G063300.3 | Barley | plastid | 52.17 | 9.19 |
| CDY44911 | Canola | cytosol | 8.7 | 3.98 |
| Zm00001d046105_P001 | Maize | peroxisome | 20.0 | 3.91 |
| Zm00001d043604_P002 | Maize | cytosol | 18.26 | 3.91 |
| CDY20626 | Canola | plastid | 10.43 | 2.01 |
| CDY20954 | Canola | plastid | 9.57 | 1.83 |
| CDY16082 | Canola | cytosol | 1.74 | 1.77 |
| Zm00001d034691_P001 | Maize | cytosol | 5.22 | 1.58 |
| CDX93413 | Canola | plastid | 7.83 | 1.51 |
| CDY55048 | Canola | plastid | 7.83 | 1.51 |
| CDY27720 | Canola | cytosol, mitochondrion | 1.74 | 0.82 |
| CDX93931 | Canola | cytosol | 1.74 | 0.59 |
| CDY05221 | Canola | cytosol, mitochondrion, nucleus, plastid | 0.87 | 0.52 |
| CDY02566 | Canola | cytosol | 0.87 | 0.51 |
| EES07543 | Sorghum | cytosol | 0.87 | 0.4 |
| Os05t0409200-00 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX93932 | EnsemblPlantsGene:GSBRNA2T00156757001 | Gene3D:1.10.246.200 | InterPro:IPR038214 | InterPro:WPP_dom | InterPro:WPP_sf |
| PANTHER:PTHR24106 | PANTHER:PTHR24106:SF248 | PFAM:PF13943 | ProteinID:CDX93932 | ProteinID:CDX93932.1 | UniParc:UPI0004EE64A7 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC04g20910D
Coordinates
chrLK031878:-:742571..743171
Molecular Weight (calculated)
12782.2 Da
IEP (calculated)
5.209
GRAVY (calculated)
-0.590
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNSVKARTE TVLSVKMWPP SKSTRLMLVD RMTNNLTTPS IFTRKYGLLT QQEAEEDAKR IEDLAFAAAN KHFQNEPDGD GTSAVQIYAK ESSKLMLEAI
101: KQGPKEDSLF DLSGG
101: KQGPKEDSLF DLSGG
001: MAETETESIT TSSPPPISET ENSTTLPTTE TEKNPNPVTI SLRIWPPTQK TRDAVINRLI ETLSTESILS KRFGSLESEE ASSVAKSIED EAYAIASATV
101: FGDDDGIEIL KAYSKEISKR MLESVKAKSN VASPPPKDGD GIESAVDSKI DSSEA
101: FGDDDGIEIL KAYSKEISKR MLESVKAKSN VASPPPKDGD GIESAVDSKI DSSEA
Arabidopsis Description
WPP1WPP domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.