CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69762
CDX89174
CDX89333
CDX92540
CDX93931
CDX93932
CDX94330
CDX97101
CDY02566
CDY06758
CDY16082
CDY17041
CDY47600
CDY66769

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11390.1	CDX89174	AT3G63130.1	18591351
AT5G11390.1	CDX93931	AT3G63130.1	18591351
AT5G11390.1	CDX93932	AT3G63130.1	18591351
AT5G11390.1	CDX89333	AT4G26455.1	18591351
AT5G11390.1	CDX94330	AT4G26455.1	18591351
AT5G11390.1	CDX69762	AT5G11390.1	18591351
AT5G11390.1	CDX97101	AT5G11390.1	18591351
AT5G11390.1	CDX92540	AT5G19320.1	18591351
AT5G11390.1	CDY02566	AT5G19320.1	18591351
AT5G11390.1	CDY16082	AT5G19320.1	18591351
AT5G11390.1	CDY06758	AT5G27940.1	18591351
AT5G11390.1	CDY17041	AT5G27940.1	18591351
AT5G11390.1	CDY47600	AT5G27940.1	18591351
AT5G11390.1	CDY66769	AT5G27940.1	18591351

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69762	Canola	nucleus	88.79	89.47
AT5G11390.1	Thale cress	cytosol, golgi, nucleus	72.42	67.99
VIT_14s0083g00730.t01	Wine grape	nucleus	43.94	40.62
KRG93747	Soybean	nucleus	32.12	38.55
Solyc02g065660.2.1	Tomato	nucleus, plastid	35.76	37.7
KRH18315	Soybean	nucleus	31.52	37.34
KRH01441	Soybean	cytosol	36.67	37.23
PGSC0003DMT400068312	Potato	cytosol, golgi, nucleus	38.18	36.84
GSMUA_Achr1P19080_001	Banana	nucleus	32.12	35.22
GSMUA_Achr7P06030_001	Banana	cytosol, golgi, nucleus	32.73	32.53
CDX95976	Canola	cytosol, peroxisome, plastid	17.73	31.28
CDY33569	Canola	cytosol, golgi, peroxisome	30.45	30.92
CDY45838	Canola	cytosol, golgi, nucleus	29.7	30.43
CDX81573	Canola	cytosol	29.39	30.41
Os05t0241000-01	Rice	nucleus	30.61	30.19
HORVU3Hr1G057330.1	Barley	cytosol	30.0	29.77
TraesCS3D01G166100.1	Wheat	cytosol	29.39	29.66
TraesCSU01G064900.1	Wheat	cytosol	30.61	29.62
TraesCS3A01G158400.1	Wheat	cytosol	30.0	29.42
TraesCS7D01G038700.1	Wheat	cytosol	30.3	29.41
TraesCS7A01G042800.1	Wheat	cytosol	30.0	29.12
OQU86053	Sorghum	cytosol, golgi, nucleus	29.24	28.98
Zm00001d039272_P003	Maize	cytosol	28.64	28.94
KXG21620	Sorghum	cytosol	28.33	28.9
HORVU7Hr1G007940.7	Barley	mitochondrion	30.61	27.9
Os01t0235350-00	Rice	cytosol	29.55	27.86
CDX95975	Canola	cytosol	6.97	24.6
Zm00001d010047_P001	Maize	plastid	27.58	24.3

Protein Annotations

EnsemblPlants:CDX97101	EnsemblPlantsGene:GSBRNA2T00104083001	GO:A0A078E7C5	ncoils:Coil	PANTHER:PTHR35705	PANTHER:PTHR35705:SF1
ProteinID:CDX97101	ProteinID:CDX97101.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE8BF7	MapMan:20.4.2.2

Description

BnaC09g45240D

Coordinates

chrLK031897:+:636452..639227

Molecular Weight (calculated)

74580.4 Da

IEP (calculated)

4.415

GRAVY (calculated)

-0.622

Length

660 amino acids

Sequence
(BLAST)

001: MEIETEHHTT VSVDDNDSLV PQPSSSKGSL LEDISLTGQA INHHPELSTA SQVLIKVELD FAFVSEKLVN LSLLTMQLGS REHDFESFAS HNKEEEDDDL
101: AEKALEFDLL SSFLNSEVKE VESLVGFLQN EIQNARVTMI SPFQDDDGDL EGKFHDAEQS LYQLMDQVVE MKKQSNSFHK LSPGSDELGS WSGGVAAESQ
201: TDGEFGDLSA KIKMQTADQQ RNVLRMLEKS LAKEMELEKK LSESRNAEYQ LEIKLYSSEQ DVLYMEEVIE DAYSRWLEAE NSSEVFKGML KEMSGKLQIL
301: KFSLSGSFKR ETNLKSELVD KESALHKLDS SNGRLGDFLM AQTEGLKESL REAEEKLILL STENSTLSEK VSSLEEQLND ATDLNEDLKE KLARAEEAES
401: ECRKMEDELG SFRAKGYTPE KLESLEKHLR DLDHQLELAV AAVEASKEKQ SLLYSTVSDM EDVIEDLKSK VSKAENRADY TEEKLITVSE SNADLNEELK
501: FCRGRLKEAE RYLQQAEERK LQTAKDIAQH NKIMKKLVLQ LASERERLHK QINNLSRENR VLMVKLKKVG QTGFTESENI SPKSDQSSLP CYQESKLQAT
601: VTSLTDQEEE EETESASDIG SVRRLDAGGL GFKHILFAIL VIFMSSMAYL MSQQNIQESF

Best Arabidopsis Sequence Match ( AT5G11390.1 )
(BLAST)

001: METETEHDRT VSVDDNDSLV PEPSSTKESF FEDLSLTGQV MNPQLSSAGE VLTKVELDFA FVSEKLVNLS LLTMQLGTRE NDFESFVSKK EEDEEEPSSN
101: VDDDDDSAEK ALEFDLLSSI LNSEVKELES LLGFLQNEIQ SARVMISPFQ HDGEAFLDLE GKLNDTEQSL GQLMEQVVEM KKQSSNFQRL SSGLDEQGSW
201: SGGQTSVSQN DGEFGDLSAK INMQTADQQR NVLRMLEKSL AKEMELEKKL SESRNTEREL EMKLYSSEQD VVYMEEVTED AFSRWLEADN AAEVFKGTSK
301: EMSGKLQILQ FNLSGSFKRE DNLKSKLVDS KERLEAKECA LHKLDSSNAR LADFLVAQTE GLKESLQEAE EKLILLNTEN STLSEKVSSL EEQLNEYGIQ
401: TEDADATSGA LITDLERINE ELKDKLAKTE ARAEETESKC KILEESKKEL QDELGNFRDK GFTIHKLASL EKHLRDSDLQ LEHAVAAVEA SKEKQNLLYS
501: TVSDMEDVIE DLKSKVLKAE NRADITEEKL IMVSESNAEV NEELKFFKGR LKEGEKYLQQ AEERKLRTAK DIGVHNKIMK KLVMQLAAER ERLHKQITNL
601: SRENCVLMVK LKKVGKTGYM ESGNGSEVSP KSDQNASSCH QGSRLQATFI SLTNPEEEET GSKSDIGSVR RLDVGALRFK HILVAILVIL ISSIAYVISQ
701: QNM

Arabidopsis Description

WIT1WPP domain-interacting tail-anchored protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7E5]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.