Factsheet for Solyc02g065660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g079680.2.1
Solyc02g065660.2.1
Solyc04g078380.1.1
Solyc07g066170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11390.1	Solyc07g066170.2.1	AT4G26455.1	18591351
AT5G11390.1	Solyc02g065660.2.1	AT5G11390.1	18591351
AT5G11390.1	Solyc01g079680.2.1	AT5G19320.1	18591351
AT5G11390.1	Solyc04g078380.1.1	AT5G27940.1	18591351

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068312	Potato	cytosol, golgi, nucleus	89.94	82.31
KRG93747	Soybean	nucleus	36.58	41.64
KRH18315	Soybean	nucleus	36.42	40.93
KRH01441	Soybean	cytosol	42.49	40.92
VIT_14s0083g00730.t01	Wine grape	nucleus	44.89	39.36
GSMUA_Achr1P19080_001	Banana	nucleus	34.66	36.05
CDX69762	Canola	nucleus	37.7	36.03
Bra008966.1-P	Field mustard	nucleus	37.7	35.98
CDX97101	Canola	cytosol, golgi, nucleus	37.7	35.76
AT5G11390.1	Thale cress	cytosol, golgi, nucleus	39.46	35.14
Os05t0241000-01	Rice	nucleus	35.46	33.18
KXG21620	Sorghum	cytosol	33.87	32.77
Zm00001d039272_P003	Maize	cytosol	33.87	32.47
OQU86053	Sorghum	cytosol, golgi, nucleus	34.03	31.98
HORVU3Hr1G057330.1	Barley	cytosol	33.71	31.73
GSMUA_Achr7P06030_001	Banana	cytosol, golgi, nucleus	33.55	31.63
TraesCSU01G064900.1	Wheat	cytosol	34.34	31.52
Solyc05g010590.2.1	Tomato	nucleus	35.14	31.34
TraesCS3D01G166100.1	Wheat	cytosol	32.59	31.19
TraesCS7D01G038700.1	Wheat	cytosol	33.71	31.03
TraesCS3A01G158400.1	Wheat	cytosol	33.23	30.91
TraesCS7A01G042800.1	Wheat	cytosol	33.55	30.88
HORVU7Hr1G007940.7	Barley	mitochondrion	34.03	29.42
Os01t0235350-00	Rice	cytosol	32.59	29.14
Zm00001d010047_P001	Maize	plastid	32.91	27.5

Protein Annotations

EnsemblPlants:Solyc02g065660.2.1	EnsemblPlantsGene:Solyc02g065660.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0016020	GO:GO:0016021	ncoils:Coil	PANTHER:PTHR35705	PANTHER:PTHR35705:SF1
SEG:seg	SUPFAM:SSF57997	TMHMM:TMhelix	UniParc:UPI0002768DEB	UniProt:K4B6Z8	MapMan:20.4.2.2

Description

WPP domain-interacting tail-anchored protein 1 [Source:Projected from Arabidopsis thaliana (AT5G11390) UniProtKB/Swiss-Prot;Acc:Q8L7E5]

Coordinates

chr2:-:36809007..36813753

Molecular Weight (calculated)

70971.2 Da

IEP (calculated)

4.519

GRAVY (calculated)

-0.519

Length

626 amino acids

Sequence
(BLAST)

001: MNADTANGKL VNLDLFVMHV ETRESDFEAF ASEKEGTSND IVEKAIEFDL LSGVLDSEVT ELSGLLSSVA TEIDNVRKVI SSRGYADEAF ILIEEKLYDS
101: EKSLKQLQDH LLELRAQCTN FHGIMLTSQG DRDWQDGEAA DYFNSDALLT PKTKIKMQTV EQQRHILRML EKSLARELDL EKKLTESRQV EEELEVRLQQ
201: EAFCMEEEIE DASQRLFEGE NAAEVLLGIS KSLLGRLQMT HFNLNGTVQK ESYLQSKLQE MEEHLKAKDN LLGKSESTSK ELGDKVKSLE KRLEDSEFQL
301: SNTTSARNSQ EIESKILEME DIINTLKEKN SEAERRIDTA ETECKILKEA NVELDKELNF LKSSSSITSE RIIVLEKQLR NSELQLQHAV ASAEASQEKQ
401: IMLNSTIKDM EDLIEDLKSK VSKAESLMES AEDKCIILSE SNSDLNEELT FVRGRLACLE SSLRQAEEMK KATARDINFR SKLITDLILQ LALERERLEK
501: QIALLIMENK AQKKPFQQKD KVPSPAPESD GKDTRESMLP KAELSAVTSL NKCKEEKFSS ITNVEENVYG DFMSIKSKET DSSTRLDASR DIDARQLSWK
601: YVLAAVLVFL ISAVVTFLVQ NQSIQL

Best Arabidopsis Sequence Match ( AT5G11390.1 )
(BLAST)

001: METETEHDRT VSVDDNDSLV PEPSSTKESF FEDLSLTGQV MNPQLSSAGE VLTKVELDFA FVSEKLVNLS LLTMQLGTRE NDFESFVSKK EEDEEEPSSN
101: VDDDDDSAEK ALEFDLLSSI LNSEVKELES LLGFLQNEIQ SARVMISPFQ HDGEAFLDLE GKLNDTEQSL GQLMEQVVEM KKQSSNFQRL SSGLDEQGSW
201: SGGQTSVSQN DGEFGDLSAK INMQTADQQR NVLRMLEKSL AKEMELEKKL SESRNTEREL EMKLYSSEQD VVYMEEVTED AFSRWLEADN AAEVFKGTSK
301: EMSGKLQILQ FNLSGSFKRE DNLKSKLVDS KERLEAKECA LHKLDSSNAR LADFLVAQTE GLKESLQEAE EKLILLNTEN STLSEKVSSL EEQLNEYGIQ
401: TEDADATSGA LITDLERINE ELKDKLAKTE ARAEETESKC KILEESKKEL QDELGNFRDK GFTIHKLASL EKHLRDSDLQ LEHAVAAVEA SKEKQNLLYS
501: TVSDMEDVIE DLKSKVLKAE NRADITEEKL IMVSESNAEV NEELKFFKGR LKEGEKYLQQ AEERKLRTAK DIGVHNKIMK KLVMQLAAER ERLHKQITNL
601: SRENCVLMVK LKKVGKTGYM ESGNGSEVSP KSDQNASSCH QGSRLQATFI SLTNPEEEET GSKSDIGSVR RLDVGALRFK HILVAILVIL ISSIAYVISQ
701: QNM

Arabidopsis Description

WIT1WPP domain-interacting tail-anchored protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7E5]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.