Factsheet for Solyc04g078380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g065660.2.1
Solyc05g010590.2.1
Solyc07g066170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47200.1	Solyc05g010590.2.1	AT1G68910.1	18591351
AT1G47200.1	Solyc07g066170.2.1	AT4G26455.1	17600715
AT1G47200.1	Solyc02g065660.2.1	AT5G11390.1	18591351
AT1G47200.1	Solyc07g066170.2.1	AT5G56210.1	17600715
AT5G27940.1	Solyc02g065660.2.1	AT5G11390.1	18591351
AT5G43070.1	Solyc07g066170.2.1	AT4G26455.1	17600715
AT5G43070.1	Solyc07g066170.2.1	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008558	Potato	nucleus	98.03	98.03
KRH15424	Soybean	nucleus, plastid	48.03	59.35
KRH05617	Soybean	nucleus	48.03	54.07
KRH52049	Soybean	endoplasmic reticulum	50.0	47.2
GSMUA_Achr9P09500_001	Banana	cytosol	38.82	46.46
VIT_18s0001g09670.t01	Wine grape	nucleus	49.34	46.01
KRH61362	Soybean	endoplasmic reticulum	48.68	45.96
Bra040752.1-P	Field mustard	nucleus	48.03	43.98
CDY06758	Canola	nucleus	48.03	43.98
AT5G43070.1	Thale cress	cytosol	44.74	43.87
Zm00001d028043_P001	Maize	mitochondrion	41.45	43.75
KXG39905	Sorghum	cytosol	40.13	43.26
CDY66769	Canola	nucleus	48.68	42.77
HORVU4Hr1G069210.1	Barley	cytosol	38.82	42.75
TraesCS4B01G252900.1	Wheat	cytosol	36.84	42.42
Zm00001d048123_P001	Maize	cytosol	39.47	42.25
TraesCS4D01G253000.1	Wheat	cytosol	36.84	41.79
TraesCS4A01G051500.1	Wheat	cytosol	36.84	41.79
Bra040794.1-P	Field mustard	nucleus	46.05	40.46
CDY17041	Canola	nucleus	46.05	40.46
CDY47600	Canola	nucleus	46.05	39.55
GSMUA_Achr4P14260_001	Banana	cytosol	44.08	38.29
Os03t0209000-01	Rice	cytosol	38.82	38.06
AT1G47200.1	Thale cress	nucleus	44.74	37.78
Os10t0337700-01	Rice	plastid	34.21	37.14
TraesCS2A01G183600.1	Wheat	nucleus	39.47	36.36
TraesCS2D01G191500.1	Wheat	nucleus	38.82	35.98
TraesCS2B01G210200.1	Wheat	nucleus	38.82	35.98
Zm00001d022025_P001	Maize	extracellular, mitochondrion	37.5	34.34
EER97479	Sorghum	nucleus	38.82	34.1
Zm00001d006756_P001	Maize	mitochondrion	38.82	33.91
AT5G27940.1	Thale cress	nucleus	30.26	29.3
HORVU2Hr1G034580.1	Barley	cytosol, nucleus	35.53	25.71

Protein Annotations

Gene3D:1.10.246.200	MapMan:35.1	EMBL:AF118113	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005737
GO:GO:0005794	GO:GO:0016363	InterPro:IPR038214	PFAM:PF13943	PANTHER:PTHR34362	PANTHER:PTHR34362:SF1
UniProt:Q9M7N6	EnsemblPlantsGene:Solyc04g078380.1	EnsemblPlants:Solyc04g078380.1.1	UniParc:UPI00000AA411	InterPro:WPP_dom	InterPro:WPP_sf
SEG:seg	:	:	:	:	:

Description

MAF1MFP1 attachment factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M7N6]

Coordinates

chr4:+:63114111..63114569

Molecular Weight (calculated)

16181.5 Da

IEP (calculated)

4.056

GRAVY (calculated)

-0.553

Length

152 amino acids

Sequence
(BLAST)

001: MAEIDSAQSQ ETVTQETQNK PMTTSFSIWP PTQRTRDAVI NRLIESLSTP SILSKRYGTL PQDEASETAR LIEEEAFAAA GSTASDADDG IEILQVYSKE
101: ISKRMIDTVK SRSAPAAASE GESKPSELPA DASEPSSASG LTGEVSSVET EP

Best Arabidopsis Sequence Match ( AT1G47200.1 )
(BLAST)

001: MAETAETINT TISSPPPESE SSTTISAMTD PTSQEAASKD TDLTKEAESE KKPGGISLRI WPPTQKTRDA VLNRLIETLS TESILSKRYG TLKSDDATTV
101: AKLIEEEAYG VASNAVSSDD DGIKILELYS KEISKRMLES VKARSNASVG NGSVEDANTD ASEVSKDDAG PASEEEKSEA

Arabidopsis Description

WPP2WPP domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.