CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93747
KRH01441
KRH18315
KRH56393
KRH62532
KRH66324
KRH71037
KRH75191
KRH77981

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47200.1	KRH71037	AT1G68910.1	18591351
AT1G47200.1	KRH75191	AT1G68910.1	18591351
AT1G47200.1	KRH56393	AT4G26455.1	17600715
AT1G47200.1	KRH62532	AT4G26455.1	17600715
AT1G47200.1	KRG93747	AT5G11390.1	18591351
AT1G47200.1	KRH01441	AT5G11390.1	18591351
AT1G47200.1	KRH18315	AT5G11390.1	18591351
AT1G47200.1	KRH66324	AT5G25070.1	21798944
AT1G47200.1	KRH77981	AT5G25070.1	21798944
AT1G47200.1	KRH56393	AT5G56210.1	17600715
AT1G47200.1	KRH62532	AT5G56210.1	17600715
AT5G27940.1	KRG93747	AT5G11390.1	18591351
AT5G27940.1	KRH01441	AT5G11390.1	18591351
AT5G27940.1	KRH18315	AT5G11390.1	18591351
AT5G43070.1	KRH56393	AT4G26455.1	17600715
AT5G43070.1	KRH62532	AT4G26455.1	17600715
AT5G43070.1	KRH56393	AT5G56210.1	17600715
AT5G43070.1	KRH62532	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05617	Soybean	nucleus	85.37	77.78
KRH52049	Soybean	endoplasmic reticulum	66.67	50.93
KRH61362	Soybean	endoplasmic reticulum	64.23	49.07
Solyc04g078380.1.1	Tomato	plastid	59.35	48.03
PGSC0003DMT400008558	Potato	nucleus	59.35	48.03
GSMUA_Achr9P09500_001	Banana	cytosol	46.34	44.88
TraesCS4B01G252900.1	Wheat	cytosol	44.72	41.67
Zm00001d048123_P001	Maize	cytosol	47.97	41.55
HORVU4Hr1G069210.1	Barley	cytosol	46.34	41.3
KXG39905	Sorghum	cytosol	47.15	41.13
TraesCS4D01G253000.1	Wheat	cytosol	44.72	41.04
TraesCS4A01G051500.1	Wheat	cytosol	44.72	41.04
Zm00001d028043_P001	Maize	mitochondrion	47.97	40.97
VIT_18s0001g09670.t01	Wine grape	nucleus	53.66	40.49
CDY06758	Canola	nucleus	53.66	39.76
Bra040752.1-P	Field mustard	nucleus	53.66	39.76
CDY66769	Canola	nucleus	54.47	38.73
Bra040794.1-P	Field mustard	nucleus	54.47	38.73
CDY17041	Canola	nucleus	53.66	38.15
AT5G43070.1	Thale cress	cytosol	47.97	38.06
CDY47600	Canola	nucleus	54.47	37.85
Os03t0209000-01	Rice	cytosol	43.9	34.84
AT1G47200.1	Thale cress	nucleus	50.41	34.44
Zm00001d022025_P001	Maize	extracellular, mitochondrion	46.34	34.34
TraesCS2D01G191500.1	Wheat	nucleus	45.53	34.15
TraesCS2A01G183600.1	Wheat	nucleus	45.53	33.94
GSMUA_Achr4P14260_001	Banana	cytosol	47.97	33.71
Os10t0337700-01	Rice	plastid	38.21	33.57
TraesCS2B01G210200.1	Wheat	nucleus	44.72	33.54
EER97479	Sorghum	nucleus	44.72	31.79
Zm00001d006756_P001	Maize	mitochondrion	44.72	31.61
AT5G27940.1	Thale cress	nucleus	37.4	29.3
HORVU2Hr1G034580.1	Barley	cytosol, nucleus	44.72	26.19

Protein Annotations

EMBL:ACUP02008592	EnsemblPlants:KRH15424	EnsemblPlantsGene:GLYMA_14G086900	EntrezGene:100791162	Gene3D:1.10.246.200	InterPro:IPR038214
InterPro:WPP_dom	InterPro:WPP_sf	PANTHER:PTHR34362	PANTHER:PTHR34362:SF1	PFAM:PF13943	ProteinID:KRH15424
ProteinID:KRH15424.1	SEG:seg	UniParc:UPI000233B6E8	UniProt:I1M8R6	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr14:-:7771401..7773151

Molecular Weight (calculated)

13060.0 Da

IEP (calculated)

4.230

GRAVY (calculated)

-0.429

Length

123 amino acids

Sequence
(BLAST)

001: MSDTETTLEQ PSTPPQPDPS AAVSFSIWPP TQRTRDAVVN RLIETLSAPS VLSKRYGTLS SDESSSAARQ IEDEAFSAAS SSDGIETLQV YSKEISKRML
101: DTVKARAAPI PSAEEGVAAS VSD

Best Arabidopsis Sequence Match ( AT5G43070.1 )
(BLAST)

001: MAETETESIT TSSPPPISET ENSTTLPTTE TEKNPNPVTI SLRIWPPTQK TRDAVINRLI ETLSTESILS KRFGSLESEE ASSVAKSIED EAYAIASATV
101: FGDDDGIEIL KAYSKEISKR MLESVKAKSN VASPPPKDGD GIESAVDSKI DSSEA

Arabidopsis Description

WPP1WPP domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.