CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88697
KRG89467
KRG89688
KRG91256
KRG93747
KRG94268
KRG94827
KRG95536
KRH01163
KRH01231
KRH01441
KRH02516
KRH04549
KRH05617
KRH06709
KRH08496
KRH12149
KRH12150
KRH12934
KRH14565
KRH14583
KRH15424
KRH16232
KRH16406
KRH18315
KRH19425
KRH26396
KRH28432
KRH32021
KRH35557
KRH37147
KRH37148
KRH37149
KRH37920
KRH38145
KRH43091
KRH44662
KRH50507
KRH50610
KRH51390
KRH52049
KRH52673
KRH53288
KRH53446
KRH56393
KRH57705
KRH57814
KRH59237
KRH60692
KRH61362
KRH62014
KRH62532
KRH64617
KRH67210
KRH68170
KRH70160
KRH71425
KRH73542
KRH73559
KRH77040

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26455.1	KRG88697	AT1G07860.1	21798944
AT4G26455.1	KRH43091	AT1G16790.1	21798944
AT4G26455.1	KRH59237	AT1G16790.1	21798944
AT4G26455.1	KRH12149	AT1G30840.1	21798944
AT4G26455.1	KRH12150	AT1G30840.1	21798944
AT4G26455.1	KRH37147	AT1G30840.1	21798944
AT4G26455.1	KRH37148	AT1G30840.1	21798944
AT4G26455.1	KRH37149	AT1G30840.1	21798944
AT4G26455.1	KRH05617	AT1G47200.1	17600715
AT4G26455.1	KRH15424	AT1G47200.1	17600715
AT4G26455.1	KRH52049	AT1G47200.1	17600715
AT4G26455.1	KRH61362	AT1G47200.1	17600715
AT4G26455.1	KRH44662	AT1G50430.1	21798944
AT4G26455.1	KRG89467	AT1G55535.1	21798944
AT4G26455.1	KRH50507	AT1G55535.1	21798944
AT4G26455.1	KRH53288	AT1G77350.1	21798944
AT4G26455.1	KRH64617	AT1G77350.1	21798944
AT4G26455.1	KRH16232	AT2G03120.1	21798944
AT4G26455.1	KRH52673	AT2G03120.1	21798944
AT4G26455.1	KRH62014	AT2G03120.1	21798944
AT4G26455.1	KRH16406	AT2G16850.1	21798944
AT4G26455.1	KRH51390	AT2G16850.1	21798944
AT4G26455.1	KRH60692	AT2G16850.1	21798944
AT4G26455.1	KRH12934	AT2G24290.1	21798944
AT4G26455.1	KRH37920	AT2G24290.1	21798944
AT4G26455.1	KRH68170	AT2G47770.1	21798944
AT4G26455.1	KRG94268	AT3G27080.1	21798944
AT4G26455.1	KRH57705	AT3G27080.1	21798944
AT4G26455.1	KRH02516	AT3G43520.1	21798944
AT4G26455.1	KRH19425	AT3G43520.1	21798944
AT4G26455.1	KRG95536	AT3G63200.1	21798944
AT4G26455.1	KRH32021	AT3G63200.1	21798944
AT4G26455.1	KRH67210	AT3G63200.1	21798944
AT4G26455.1	KRH71425	AT3G63200.1	21798944
AT4G26455.1	KRH56393	AT4G26455.1	17600715
AT4G26455.1	KRH62532	AT4G26455.1	17600715
AT4G26455.1	KRG89688	AT5G01430.1	21798944
AT4G26455.1	KRH14583	AT5G01430.1	21798944
AT4G26455.1	KRH50610	AT5G01430.1	21798944
AT4G26455.1	KRH73542	AT5G01430.1	21798944
AT4G26455.1	KRG93747	AT5G11390.1	18591351
AT4G26455.1	KRH01441	AT5G11390.1	18591351
AT4G26455.1	KRH18315	AT5G11390.1	18591351
AT4G26455.1	KRH14565	AT5G12390.1	21798944
AT4G26455.1	KRH73559	AT5G12390.1	21798944
AT4G26455.1	KRG94827	AT5G18150.1	21798944
AT4G26455.1	KRH06709	AT5G18150.1	21798944
AT4G26455.1	KRH08496	AT5G18150.1	21798944
AT4G26455.1	KRH70160	AT5G18150.1	21798944
AT4G26455.1	KRG91256	AT5G19320.1	17600715
AT4G26455.1	KRH35557	AT5G19320.1	17600715
AT4G26455.1	KRH53446	AT5G24130.1	21798944
AT4G26455.1	KRH05617	AT5G43070.1	17600715
AT4G26455.1	KRH15424	AT5G43070.1	17600715
AT4G26455.1	KRH52049	AT5G43070.1	17600715
AT4G26455.1	KRH61362	AT5G43070.1	17600715
AT4G26455.1	KRH56393	AT5G56210.1	17600715
AT4G26455.1	KRH62532	AT5G56210.1	17600715
AT4G26455.1	KRH01163	AT5G60460.1	21798944
AT4G26455.1	KRH01231	AT5G60460.1	21798944
AT4G26455.1	KRH26396	AT5G60460.1	21798944
AT4G26455.1	KRH38145	AT5G60460.1	21798944
AT4G26455.1	KRH04549	AT5G67210.1	21798944
AT4G26455.1	KRH28432	AT5G67210.1	21798944
AT4G26455.1	KRH57814	AT5G67210.1	21798944
AT4G26455.1	KRH77040	AT5G67210.1	21798944
AT5G56210.1	KRH05617	AT1G47200.1	17600715
AT5G56210.1	KRH15424	AT1G47200.1	17600715
AT5G56210.1	KRH52049	AT1G47200.1	17600715
AT5G56210.1	KRH61362	AT1G47200.1	17600715
AT5G56210.1	KRH56393	AT4G26455.1	17600715
AT5G56210.1	KRH62532	AT4G26455.1	17600715
AT5G56210.1	KRG93747	AT5G11390.1	18591351
AT5G56210.1	KRH01441	AT5G11390.1	18591351
AT5G56210.1	KRH18315	AT5G11390.1	18591351
AT5G56210.1	KRG91256	AT5G19320.1	17600715
AT5G56210.1	KRH35557	AT5G19320.1	17600715
AT5G56210.1	KRH05617	AT5G43070.1	17600715
AT5G56210.1	KRH15424	AT5G43070.1	17600715
AT5G56210.1	KRH52049	AT5G43070.1	17600715
AT5G56210.1	KRH61362	AT5G43070.1	17600715
AT5G56210.1	KRH56393	AT5G56210.1	17600715
AT5G56210.1	KRH62532	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56393	Soybean	cytosol	85.3	85.01
VIT_19s0015g01790.t01	Wine grape	nucleus	39.66	37.78
Solyc07g066170.2.1	Tomato	nucleus	21.2	37.01
PGSC0003DMT400056956	Potato	nucleus	34.19	33.44
AT5G56210.1	Thale cress	nucleus	27.52	31.63
CDY43354	Canola	cytosol, golgi, nucleus	21.37	31.33
Bra039387.1-P	Field mustard	cytosol, golgi, nucleus, plastid	21.37	31.25
CDX75706	Canola	cytosol, golgi, nucleus	22.22	30.95
PGSC0003DMT400022426	Potato	nucleus	30.6	30.55
CDY17403	Canola	nucleus	14.36	30.43
Bra002835.1-P	Field mustard	cytosol, golgi, nucleus	14.36	30.43
AT4G26455.1	Thale cress	nucleus	25.3	30.27
CDY32806	Canola	cytosol, golgi, nucleus	14.02	29.39
CDX89333	Canola	nucleus	24.79	29.29
Bra001502.1-P	Field mustard	nucleus, plastid	22.05	29.19
GSMUA_Achr10P...	Banana	cytosol	24.79	28.77
CDY24192	Canola	plastid	14.87	28.71
Bra026434.1-P	Field mustard	nucleus	24.27	28.69
CDX82542	Canola	plastid	21.71	28.67
CDX94330	Canola	nucleus	23.93	28.51
GSMUA_Achr3P04120_001	Banana	nucleus	28.21	27.78
GSMUA_Achr4P01630_001	Banana	cytosol, golgi, nucleus	26.32	25.88
TraesCS2B01G351300.1	Wheat	cytosol, golgi, nucleus	12.82	25.17
EER96942	Sorghum	cytosol, golgi, nucleus, plastid	22.73	24.54
TraesCS7A01G240200.1	Wheat	cytosol	22.39	24.08
TraesCS7B01G135800.1	Wheat	cytosol, golgi, nucleus	22.05	23.98
TraesCS7D01G238200.1	Wheat	cytosol	21.88	23.84
Zm00001d005997_P002	Maize	plastid	21.71	23.61
Os04t0471300-01	Rice	cytosol, golgi, nucleus	12.14	23.51
AT3G13360.2	Thale cress	extracellular, plasma membrane, vacuole	20.68	23.36
HORVU5Hr1G071910.1	Barley	nucleus	21.71	23.18
EES14314	Sorghum	nucleus	20.0	23.12
Zm00001d020879_P001	Maize	cytosol, golgi, nucleus, plastid	15.73	22.94
TraesCS5A01G257000.1	Wheat	cytosol, golgi, nucleus, plastid	21.37	22.94
TraesCS5D01G265600.1	Wheat	nucleus	21.54	22.83
Zm00001d003334_P001	Maize	cytosol, nucleus, plastid	11.97	22.73
TraesCS5B01G256500.1	Wheat	cytosol, golgi, nucleus, plastid	21.2	22.71
Os08t0497900-01	Rice	nucleus	17.78	22.51
HORVU7Hr1G048940.3	Barley	cytosol	21.37	21.89
HORVU2Hr1G081800.3	Barley	cytosol, nucleus	17.09	21.64
Os09t0481300-01	Rice	nucleus	18.97	21.06
TraesCS2D01G332000.1	Wheat	cytosol	17.44	20.0
TraesCS2A01G331000.1	Wheat	cytosol	17.09	19.61
OQU81760	Sorghum	nucleus	14.19	19.48
Zm00001d025667_P001	Maize	cytosol	16.07	19.26

Protein Annotations

EMBL:ACUP02002302	EnsemblPlants:KRH62532	EnsemblPlantsGene:GLYMA_04G113700	EntrezGene:100794612	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	ncoils:Coil	PANTHER:PTHR34562	PANTHER:PTHR34562:SF1	ProteinID:KRH62532	ProteinID:KRH62532.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0006ED64B2	UniProt:A0A0R0KFX3	MapMan:20.4.2.1.2	:

Description

hypothetical protein

Coordinates

chr4:-:12908934..12913483

Molecular Weight (calculated)

63276.1 Da

IEP (calculated)

4.545

GRAVY (calculated)

-0.609

Length

585 amino acids

Sequence
(BLAST)

001: MDLGSESVEE NEVNHDGNGN GGSYDDEKIG LGLEGNSDVN GSDQKGTVGE VEVGSAEGVN SKGTPTKGFG LKKWKRIRRN VVKDPNSSVD SGKVLKRGLS
101: GNANLSESQP FLRDVKEKNE GSSNMFGNVV FSDGNVIHGS SSDSRYALGS GFVVGTDSEN SEDQSSKSST AASEPKLRQE KSRSKNVNSK HLANSAQRVQ
201: PGKGRTEGSK KPGGGGRVKI EKENSFSSLE SDSRSSNFKQ GVFSVTSNGK HTSRPNVYDG VNSGEAHTNE HFTEGVEAGY GNENVVEDEY LLQENLGTNL
301: SWDVTEEKSV NNQSSAVEDP IIESVSCLQA VQEALQEELQ KFREIGIEAI SPDDDSAKCS SVSAGTTIDL GLNKSSQSGQ SGAEEIRQTA SSSSDPQVLS
401: LTQNINILES KLEDLQGVLA LKDSRIAELE ASLSSVKISR EESASTIDLS EKKCEGVESE LEGLFKLRIE AEVEYLAISK VMQNMKGGAG IQQTLLEEQE
501: KLSENQAQIL DKVVDAESKA SVLKNKTEEL EKYCGDSVVV EESFVLQRRV CKMSFYLFIQ FMFLVLIFWL YMSQLSHNSG MVVPT

Best Arabidopsis Sequence Match ( AT5G56210.1 )
(BLAST)

001: MDLESESSVL ESVEDNNGLI GDLDKELNSP VETSPLISKG FGLRKWKRRL RRDLVKDDTS VSMENSKALK RVLSGLVDPN AKQMHLPGPE VRQDSVGSVG
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT

Arabidopsis Description

WIP2WPP domain-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH18]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.