Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 3
- golgi 3
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH37920 | Soybean | endoplasmic reticulum | 88.2 | 88.7 |
| AT4G30996.1 | Thale cress | extracellular, golgi | 68.54 | 70.93 |
| CDY51486 | Canola | extracellular, golgi | 67.98 | 70.35 |
| Bra010260.1-P | Field mustard | extracellular, golgi | 66.29 | 68.6 |
| AT2G24290.1 | Thale cress | extracellular, golgi | 66.29 | 68.21 |
| CDX68715 | Canola | extracellular, golgi | 65.73 | 68.02 |
| CDY23272 | Canola | extracellular, golgi | 65.73 | 68.02 |
| Bra011240.1-P | Field mustard | extracellular, golgi | 65.73 | 67.63 |
| CDY28236 | Canola | extracellular, golgi | 65.73 | 67.63 |
| VIT_11s0206g00100.t01 | Wine grape | extracellular, golgi | 65.17 | 67.05 |
| CDY13405 | Canola | cytosol | 45.51 | 66.39 |
| CDX72284 | Canola | extracellular, golgi | 64.04 | 65.9 |
| Solyc07g005180.2.1 | Tomato | nucleus | 60.67 | 63.91 |
| PGSC0003DMT400008268 | Potato | extracellular, golgi | 60.67 | 63.91 |
| VIT_00s0912g00010.t01 | Wine grape | cytosol | 41.01 | 63.48 |
| GSMUA_AchrUn_... | Banana | extracellular, golgi | 62.92 | 62.22 |
| Zm00001d025794_P002 | Maize | golgi, plasma membrane, plastid | 59.55 | 56.08 |
| EES11077 | Sorghum | mitochondrion, plastid | 60.67 | 55.38 |
| TraesCS2B01G375800.1 | Wheat | golgi | 58.43 | 55.32 |
| Os04t0501800-00 | Rice | golgi, plasma membrane | 60.67 | 55.1 |
| TraesCS2A01G356500.1 | Wheat | golgi | 57.87 | 54.79 |
| TraesCS2D01G355400.1 | Wheat | golgi | 57.87 | 54.21 |
| KRH36493 | Soybean | cytosol, mitochondrion, nucleus | 28.65 | 50.49 |
| KRH56166 | Soybean | endoplasmic reticulum | 43.82 | 41.71 |
| KRH11478 | Soybean | golgi | 41.57 | 40.88 |
| KRH68600 | Soybean | mitochondrion, plastid | 39.89 | 40.11 |
| KRG96872 | Soybean | mitochondrion, plastid | 39.33 | 39.33 |
| KRH25351 | Soybean | endoplasmic reticulum | 41.57 | 39.15 |
| KRH22588 | Soybean | extracellular | 37.08 | 34.74 |
| HORVU2Hr1G086810.2 | Barley | cytosol | 44.38 | 31.35 |
Protein Annotations
| EntrezGene:100527407 | MapMan:35.2 | EMBL:ACUP02009483 | EMBL:BT092248 | UniProt:C6T487 | ncoils:Coil |
| InterPro:DUF1068 | EnsemblPlantsGene:GLYMA_15G206000 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlants:KRH12934 |
| ProteinID:KRH12934 | ProteinID:KRH12934.1 | PFAM:PF06364 | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF4 | TMHMM:TMhelix |
| UniParc:UPI0001B15810 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr15:+:28910379..28913972
Molecular Weight (calculated)
19794.8 Da
IEP (calculated)
7.126
GRAVY (calculated)
-0.356
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRGRSDSGG WLRGCLVVFA VVSALGVCGP ALYWRFKNAI TLRNSHSSKL SCPPCLCDCP PPLSLFQLAP GLANLSISDC GSNDPDLKEE MEKQFVDLLS
101: EELKLQESVT EANTRHMNIT LAEAKRVASQ YQREADKCIA ATETCEQARE RAQAILTKEK KMTLVWEKRA RQMGWEGE
101: EELKLQESVT EANTRHMNIT LAEAKRVASQ YQREADKCIA ATETCEQARE RAQAILTKEK KMTLVWEKRA RQMGWEGE
001: MARRSGNCMR CLVIFSVVSA LLVCGPALYW KLNKGFVGSA RSTNSICPPC VCDFPPPLSL LQIAPGLANL SITGCGSDDP ELKEEMEKPF VDLLTEELKL
101: QEAVADEHSR HMNVTLAEAK RVASQYQKEA EKCNAATEIC ESARERAQAL LLKERKITFL WERRARQLGW EGE
101: QEAVADEHSR HMNVTLAEAK RVASQYQKEA EKCNAATEIC ESARERAQAL LLKERKITFL WERRARQLGW EGE
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQ38]
SUBAcon: [extracellular,golgi]
SUBAcon: [extracellular,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.