CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH22653
KRH26664
KRH42923
KRH42926
KRH45251
KRH56393
KRH59035
KRH59036
KRH62532

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05070.1	KRH11076	AT4G19030.1	21798944
AT1G05070.1	KRH21197	AT4G19030.1	21798944
AT1G05070.1	KRH42923	AT4G19030.1	21798944
AT1G05070.1	KRH42926	AT4G19030.1	21798944
AT1G05070.1	KRH45251	AT4G19030.1	21798944
AT1G05070.1	KRH59035	AT4G19030.1	21798944
AT1G05070.1	KRH59036	AT4G19030.1	21798944
AT2G32580.1	KRH56393	AT4G26455.1	21798944
AT2G32580.1	KRH62532	AT4G26455.1	21798944
AT2G32580.1	KRH22653	AT5G22290.1	21798944
AT2G32580.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25351	Soybean	endoplasmic reticulum	93.05	92.06
KRH22588	Soybean	extracellular	70.59	69.47
VIT_12s0059g01040.t01	Wine grape	extracellular, plasma membrane	69.52	65.33
CDY18288	Canola	extracellular	51.34	64.0
Bra005603.1-P	Field mustard	extracellular	62.57	63.93
CDY12195	Canola	extracellular	62.57	63.93
CDY61410	Canola	extracellular	62.57	63.93
Solyc07g049730.2.1	Tomato	nucleus	65.78	62.44
Bra015386.1-P	Field mustard	endoplasmic reticulum, extracellular	49.73	62.0
PGSC0003DMT400002793	Potato	extracellular, mitochondrion, plasma membrane, plastid	64.71	61.42
CDY53389	Canola	extracellular	49.2	61.33
KRH36493	Soybean	cytosol, mitochondrion, nucleus	32.62	60.4
AT2G32580.1	Thale cress	extracellular	58.82	60.11
TraesCS5B01G416100.1	Wheat	cytosol, mitochondrion, nucleus	36.9	59.48
AT1G05070.1	Thale cress	extracellular	58.29	59.24
GSMUA_Achr5P24760_001	Banana	golgi	59.36	58.73
TraesCS5D01G421600.1	Wheat	cytosol, mitochondrion, nucleus	34.76	58.56
TraesCS5A01G412400.1	Wheat	cytosol, mitochondrion, nucleus	35.29	56.9
KRH11478	Soybean	golgi	49.73	51.38
EER90798	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	47.06	49.16
TraesCS5D01G421400.1	Wheat	endoplasmic reticulum, plasma membrane	46.52	48.88
TraesCS5A01G412700.1	Wheat	endoplasmic reticulum, plasma membrane	46.52	48.88
TraesCS5B01G416000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	48.13	48.65
Os03t0777500-01	Rice	endoplasmic reticulum, plasma membrane	47.59	48.63
TraesCS5A01G412800.1	Wheat	extracellular, plasma membrane	45.99	48.31
TraesCS5A01G412200.1	Wheat	plastid	47.59	48.11
HORVU5Hr1G099550.1	Barley	endoplasmic reticulum, plasma membrane	47.06	48.09
TraesCS5B01G416300.1	Wheat	endoplasmic reticulum, plasma membrane	45.99	48.04
Zm00001d034279_P001	Maize	extracellular	45.99	47.78
KRH12934	Soybean	endoplasmic reticulum	41.71	43.82
KRH37920	Soybean	endoplasmic reticulum	41.18	43.5
GSMUA_Achr6P04630_001	Banana	plastid	58.82	42.31
KRG96872	Soybean	mitochondrion, plastid	39.04	41.01
KRH68600	Soybean	mitochondrion, plastid	37.43	39.55
HORVU5Hr1G099640.1	Barley	extracellular, mitochondrion, plasma membrane, plastid	44.92	38.53

Protein Annotations

EntrezGene:100499986	MapMan:35.2	EMBL:ACUP02004104	ncoils:Coil	InterPro:DUF1068	EnsemblPlantsGene:GLYMA_06G308000
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	UniProt:I1KFG1	EnsemblPlants:KRH56166	ProteinID:KRH56166	ProteinID:KRH56166.1
PFAM:PF06364	PANTHER:PTHR32254	PANTHER:PTHR32254:SF11	TMHMM:TMhelix	UniParc:UPI00023C7521	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:49678438..49681183

Molecular Weight (calculated)

20410.3 Da

IEP (calculated)

6.497

GRAVY (calculated)

-0.318

Length

187 amino acids

Sequence
(BLAST)

001: MALNQSKAVL LRVSLVVVAL CIAGYIVGPP LYWHFVAVNN HSSSSTCAPC ICDCSSQPIL SIPQGLSNTS FGDCAKPDPE VSGDTEKNFA ELLTEELKLQ
101: ESQAVENQQR ADMALLEAKK IASQYQKEAD KCNSGMETCE EAREKAELTL VTQKKLTALW ELRARQKGWK EGLAKSHAHS QGKVQSS

Best Arabidopsis Sequence Match ( AT1G05070.1 )
(BLAST)

001: MARHTAALKI GLALLGLSMA GYILGPPLYW HLTEALAAVS ASSCPSCPCE CSTYSAVTIP KELSNASFAD CAKHDPEVNE DTEKNYAELL TEELKLREAE
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA

Arabidopsis Description

At1g05070/T7A14_6 [Source:UniProtKB/TrEMBL;Acc:Q94AB8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.