Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 6
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 4
- vacuole 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G05070.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT1G05070.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT1G05070.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT1G05070.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015386.1-P | Field mustard | endoplasmic reticulum, extracellular | 90.67 | 90.67 |
| CDY53389 | Canola | extracellular | 90.0 | 90.0 |
| AT1G05070.1 | Thale cress | extracellular | 82.67 | 67.39 |
| CDY61410 | Canola | extracellular | 77.33 | 63.39 |
| CDY12195 | Canola | extracellular | 76.67 | 62.84 |
| TraesCS5B01G416100.1 | Wheat | cytosol, mitochondrion, nucleus | 40.67 | 52.59 |
| TraesCS5D01G421600.1 | Wheat | cytosol, mitochondrion, nucleus | 38.67 | 52.25 |
| TraesCS5A01G412400.1 | Wheat | cytosol, mitochondrion, nucleus | 40.0 | 51.72 |
| KRH56166 | Soybean | endoplasmic reticulum | 64.0 | 51.34 |
| VIT_12s0059g01040.t01 | Wine grape | extracellular, plasma membrane | 66.67 | 50.25 |
| KRH25351 | Soybean | endoplasmic reticulum | 62.0 | 49.21 |
| PGSC0003DMT400002793 | Potato | extracellular, mitochondrion, plasma membrane, plastid | 62.67 | 47.72 |
| Solyc07g049730.2.1 | Tomato | nucleus | 62.67 | 47.72 |
| KRH22588 | Soybean | extracellular | 59.33 | 46.84 |
| CDY13405 | Canola | cytosol | 34.67 | 42.62 |
| CDY21300 | Canola | nucleus | 44.0 | 42.58 |
| CDX90862 | Canola | extracellular | 48.67 | 41.71 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 52.0 | 41.27 |
| CDX90859 | Canola | extracellular | 48.0 | 41.14 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 48.0 | 38.92 |
| TraesCS5D01G421400.1 | Wheat | endoplasmic reticulum, plasma membrane | 46.0 | 38.76 |
| CDX94551 | Canola | extracellular, golgi, vacuole | 45.33 | 38.2 |
| TraesCS5A01G412700.1 | Wheat | endoplasmic reticulum, plasma membrane | 45.33 | 38.2 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 45.33 | 37.99 |
| TraesCS5A01G412200.1 | Wheat | plastid | 46.67 | 37.84 |
| Zm00001d034279_P001 | Maize | extracellular | 45.33 | 37.78 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 46.0 | 37.7 |
| TraesCS5A01G412800.1 | Wheat | extracellular, plasma membrane | 44.67 | 37.64 |
| TraesCS5B01G416300.1 | Wheat | endoplasmic reticulum, plasma membrane | 44.67 | 37.43 |
| HORVU5Hr1G099550.1 | Barley | endoplasmic reticulum, plasma membrane | 45.33 | 37.16 |
| CDY23272 | Canola | extracellular, golgi | 39.33 | 34.3 |
| CDX68715 | Canola | extracellular, golgi | 39.33 | 34.3 |
| CDY28236 | Canola | extracellular, golgi | 39.33 | 34.1 |
| CDX72284 | Canola | extracellular, golgi | 39.33 | 34.1 |
| CDY51486 | Canola | extracellular, golgi | 38.67 | 33.72 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 51.33 | 29.62 |
| HORVU5Hr1G099640.1 | Barley | extracellular, mitochondrion, plasma membrane, plastid | 42.0 | 28.9 |
Protein Annotations
| EnsemblPlants:CDY18288 | EnsemblPlantsGene:GSBRNA2T00002825001 | InterPro:DUF1068 | ncoils:Coil | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF11 |
| PFAM:PF06364 | ProteinID:CDY18288 | ProteinID:CDY18288.1 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0004EDCA1B |
| UniProt:A0A078G0Y6 | MapMan:35.2 | : | : | : | : |
Description
BnaC05g03110DBnaC05g03110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0Y6]
Coordinates
chrLK032083:-:690849..691907
Molecular Weight (calculated)
16455.4 Da
IEP (calculated)
6.279
GRAVY (calculated)
-0.751
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MASHAAALKV GLALMGMSLP FLTIPEGLSN ASFPDCAKHD PEVNGDTEKN YAELLTEELK LREADSLEKH KRADMGLLEA KKVTSSYQKD ADKCNSGMET
101: CEEAREKAEL ALAEQKKLTS KWEERARQKG WREGAIKSNT KTNSNAQAAA
101: CEEAREKAEL ALAEQKKLTS KWEERARQKG WREGAIKSNT KTNSNAQAAA
001: MARHTAALKI GLALLGLSMA GYILGPPLYW HLTEALAAVS ASSCPSCPCE CSTYSAVTIP KELSNASFAD CAKHDPEVNE DTEKNYAELL TEELKLREAE
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA
Arabidopsis Description
At1g05070/T7A14_6 [Source:UniProtKB/TrEMBL;Acc:Q94AB8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.