Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G32580.1 | EER96942 | AT4G26455.1 | 21798944 |
| AT2G32580.1 | EES14314 | AT4G26455.1 | 21798944 |
| AT2G32580.1 | OQU81760 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034279_P001 | Maize | extracellular | 94.97 | 94.44 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 83.24 | 81.42 |
| HORVU5Hr1G099550.1 | Barley | endoplasmic reticulum, plasma membrane | 78.77 | 77.05 |
| TraesCS5A01G412200.1 | Wheat | plastid | 78.77 | 76.22 |
| TraesCS5A01G412400.1 | Wheat | cytosol, mitochondrion, nucleus | 48.6 | 75.0 |
| TraesCS5D01G421400.1 | Wheat | endoplasmic reticulum, plasma membrane | 74.3 | 74.72 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 77.09 | 74.59 |
| TraesCS5B01G416100.1 | Wheat | cytosol, mitochondrion, nucleus | 48.04 | 74.14 |
| TraesCS5D01G421600.1 | Wheat | cytosol, mitochondrion, nucleus | 45.81 | 73.87 |
| TraesCS5A01G412700.1 | Wheat | endoplasmic reticulum, plasma membrane | 73.18 | 73.6 |
| TraesCS5A01G412800.1 | Wheat | extracellular, plasma membrane | 72.63 | 73.03 |
| TraesCS5B01G416300.1 | Wheat | endoplasmic reticulum, plasma membrane | 72.63 | 72.63 |
| Solyc02g080960.1.1 | Tomato | cytosol, mitochondrion, nucleus | 25.14 | 60.0 |
| HORVU5Hr1G099640.1 | Barley | extracellular, mitochondrion, plasma membrane, plastid | 71.51 | 58.72 |
| KRH36493 | Soybean | cytosol, mitochondrion, nucleus | 32.4 | 57.43 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 57.54 | 54.5 |
| CDY12195 | Canola | extracellular | 50.84 | 49.73 |
| CDY61410 | Canola | extracellular | 50.84 | 49.73 |
| Bra005603.1-P | Field mustard | extracellular | 50.84 | 49.73 |
| AT2G32580.1 | Thale cress | extracellular | 50.28 | 49.18 |
| AT1G05070.1 | Thale cress | extracellular | 49.72 | 48.37 |
| CDY53389 | Canola | extracellular | 40.22 | 48.0 |
| KRH25351 | Soybean | endoplasmic reticulum | 50.28 | 47.62 |
| VIT_12s0059g01040.t01 | Wine grape | extracellular, plasma membrane | 52.51 | 47.24 |
| KRH56166 | Soybean | endoplasmic reticulum | 49.16 | 47.06 |
| Bra015386.1-P | Field mustard | endoplasmic reticulum, extracellular | 38.55 | 46.0 |
| KRH11478 | Soybean | golgi | 46.37 | 45.86 |
| Solyc07g049730.2.1 | Tomato | nucleus | 50.28 | 45.69 |
| CDY18288 | Canola | extracellular | 37.99 | 45.33 |
| PGSC0003DMT400002793 | Potato | extracellular, mitochondrion, plasma membrane, plastid | 49.72 | 45.18 |
| AT4G04360.1 | Thale cress | extracellular, golgi | 43.02 | 43.75 |
| KRH22588 | Soybean | extracellular | 45.81 | 43.16 |
| CDY21300 | Canola | nucleus | 36.87 | 42.58 |
| CDX90862 | Canola | extracellular | 41.34 | 42.29 |
| Bra000792.1-P | Field mustard | extracellular | 41.34 | 42.29 |
| CDX94551 | Canola | extracellular, golgi, vacuole | 41.9 | 42.13 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 60.34 | 41.54 |
| CDX90859 | Canola | extracellular | 40.22 | 41.14 |
| EES11077 | Sorghum | mitochondrion, plastid | 35.75 | 32.82 |
Protein Annotations
| EnsemblPlants:EER90798 | EnsemblPlantsGene:SORBI_3001G070800 | EntrezGene:8084163 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF1068 | ncoils:Coil | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF11 | PFAM:PF06364 | ProteinID:EER90798 |
| ProteinID:EER90798.1 | RefSeq:XP_002463800.1 | SEG:seg | TMHMM:TMhelix | unigene:Sbi.12107 | UniParc:UPI0001A82213 |
| UniProt:C5WZ35 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:5400024..5402891
Molecular Weight (calculated)
19302.8 Da
IEP (calculated)
4.951
GRAVY (calculated)
-0.372
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGASSAW GPSPALVTAL VALLGLGLAA YIVGPQLYWH AAEALTAAAA CPACDCNCDA RPLLDLPEDC AKHFKGVKSR ASGEETEKSF TELLVEELKQ
101: REEEATQAQQ EADVKLLEAK KLASQYQKEA DKCSSGMDTC EEAREKSAVA LVQQKKLTSL WEQRARELGW KPENTKAHL
101: REEEATQAQQ EADVKLLEAK KLASQYQKEA DKCSSGMDTC EEAREKSAVA LVQQKKLTSL WEQRARELGW KPENTKAHL
001: MAKHTAALKV GLALLALSMI GYILGPPLYW HLTEALAVSA TSCSACVCDC SSLPLLTIPT GLSNGSFTDC AKRDPEVNED TEKNYAELLT EELKQREAAS
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KAEKALVEQK KLTSMWEQRA RQKGYKDGAT KSTVKSKSGT EVA
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KAEKALVEQK KLTSMWEQRA RQKGYKDGAT KSTVKSKSGT EVA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80895]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.