Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000792.1-P | Field mustard | extracellular | 90.34 | 90.86 |
| CDX90862 | Canola | extracellular | 90.34 | 90.86 |
| CDX94551 | Canola | extracellular, golgi, vacuole | 87.5 | 86.52 |
| CDX90859 | Canola | extracellular | 84.09 | 84.57 |
| CDY21300 | Canola | nucleus | 73.3 | 83.23 |
| Solyc02g080960.1.1 | Tomato | cytosol, mitochondrion, nucleus | 25.57 | 60.0 |
| KRH36493 | Soybean | cytosol, mitochondrion, nucleus | 32.95 | 57.43 |
| KRH11478 | Soybean | golgi | 56.25 | 54.7 |
| AT2G32580.1 | Thale cress | extracellular | 52.84 | 50.82 |
| AT1G05070.1 | Thale cress | extracellular | 52.27 | 50.0 |
| TraesCS5A01G412400.1 | Wheat | cytosol, mitochondrion, nucleus | 32.95 | 50.0 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 53.41 | 49.74 |
| TraesCS5D01G421600.1 | Wheat | cytosol, mitochondrion, nucleus | 30.68 | 48.65 |
| TraesCS5B01G416100.1 | Wheat | cytosol, mitochondrion, nucleus | 31.25 | 47.41 |
| TraesCS5D01G421400.1 | Wheat | endoplasmic reticulum, plasma membrane | 46.59 | 46.07 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 46.02 | 44.26 |
| HORVU5Hr1G099550.1 | Barley | endoplasmic reticulum, plasma membrane | 46.02 | 44.26 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 46.02 | 43.78 |
| TraesCS5A01G412200.1 | Wheat | plastid | 45.45 | 43.24 |
| TraesCS5B01G416300.1 | Wheat | endoplasmic reticulum, plasma membrane | 43.75 | 43.02 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 43.75 | 43.02 |
| TraesCS5A01G412700.1 | Wheat | endoplasmic reticulum, plasma membrane | 43.18 | 42.7 |
| AT2G24290.1 | Thale cress | extracellular, golgi | 41.48 | 42.2 |
| TraesCS5A01G412800.1 | Wheat | extracellular, plasma membrane | 42.61 | 42.13 |
| AT4G30996.1 | Thale cress | extracellular, golgi | 40.91 | 41.86 |
| Zm00001d034279_P001 | Maize | extracellular | 42.05 | 41.11 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 55.68 | 37.69 |
| HORVU5Hr1G099640.1 | Barley | extracellular, mitochondrion, plasma membrane, plastid | 41.48 | 33.49 |
Protein Annotations
| MapMan:35.2 | EntrezGene:825756 | ProteinID:AEE82384.1 | ArrayExpress:AT4G04360 | EnsemblPlantsGene:AT4G04360 | RefSeq:AT4G04360 |
| TAIR:AT4G04360 | RefSeq:AT4G04360-TAIR-G | EnsemblPlants:AT4G04360.1 | TAIR:AT4G04360.1 | ncoils:Coil | InterPro:DUF1068 |
| UniProt:F4JGC5 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_192345.4 |
| PFAM:PF06364 | PO:PO:0000293 | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF11 | TMHMM:TMhelix | UniParc:UPI0001A7B09C |
| SEG:seg | : | : | : | : | : |
Description
Protein of unknown function (DUF1068) [Source:TAIR;Acc:AT4G04360]
Coordinates
chr4:-:2133139..2133935
Molecular Weight (calculated)
19780.4 Da
IEP (calculated)
4.739
GRAVY (calculated)
-0.475
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRRQKKTAK VVTVVMGLCI VAYIAGPSLY WHLNETIADS LHSSCPPCVC DCSSQPLLSI PDGLSNHSFL DCMRHEEGSE ESESSFTEMV AEELKLREAQ
101: AQEDEWRADR LLLDAKKAAS QYQKEADKCS MGMETCELAR EKAEAALDEQ RRLSYMWELR ARQGGWKEGT VASDVI
101: AQEDEWRADR LLLDAKKAAS QYQKEADKCS MGMETCELAR EKAEAALDEQ RRLSYMWELR ARQGGWKEGT VASDVI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.