Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 3
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G412700.1 | Wheat | endoplasmic reticulum, plasma membrane | 92.18 | 92.7 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 88.83 | 85.95 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 80.45 | 78.69 |
| TraesCS5B01G416100.1 | Wheat | cytosol, mitochondrion, nucleus | 49.72 | 76.72 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 72.63 | 72.63 |
| HORVU5Hr1G099640.1 | Barley | extracellular, mitochondrion, plasma membrane, plastid | 87.15 | 71.56 |
| Zm00001d034279_P001 | Maize | extracellular | 69.83 | 69.44 |
| Solyc02g080960.1.1 | Tomato | cytosol, mitochondrion, nucleus | 25.14 | 60.0 |
| KRH36493 | Soybean | cytosol, mitochondrion, nucleus | 31.84 | 56.44 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 54.75 | 51.85 |
| Bra005603.1-P | Field mustard | extracellular | 49.16 | 48.09 |
| CDY61410 | Canola | extracellular | 49.16 | 48.09 |
| KRH25351 | Soybean | endoplasmic reticulum | 50.28 | 47.62 |
| AT2G32580.1 | Thale cress | extracellular | 48.6 | 47.54 |
| CDY12195 | Canola | extracellular | 48.6 | 47.54 |
| AT1G05070.1 | Thale cress | extracellular | 48.04 | 46.74 |
| KRH56166 | Soybean | endoplasmic reticulum | 48.04 | 45.99 |
| KRH11478 | Soybean | golgi | 46.37 | 45.86 |
| CDY53389 | Canola | extracellular | 37.99 | 45.33 |
| CDY18288 | Canola | extracellular | 37.43 | 44.67 |
| VIT_12s0059g01040.t01 | Wine grape | extracellular, plasma membrane | 49.16 | 44.22 |
| Solyc07g049730.2.1 | Tomato | nucleus | 48.6 | 44.16 |
| AT4G04360.1 | Thale cress | extracellular, golgi | 43.02 | 43.75 |
| PGSC0003DMT400002793 | Potato | extracellular, mitochondrion, plasma membrane, plastid | 48.04 | 43.65 |
| Bra015386.1-P | Field mustard | endoplasmic reticulum, extracellular | 36.31 | 43.33 |
| CDX90862 | Canola | extracellular | 41.34 | 42.29 |
| Bra000792.1-P | Field mustard | extracellular | 41.34 | 42.29 |
| CDY21300 | Canola | nucleus | 36.31 | 41.94 |
| CDX94551 | Canola | extracellular, golgi, vacuole | 41.34 | 41.57 |
| CDX90859 | Canola | extracellular | 40.22 | 41.14 |
| KRH22588 | Soybean | extracellular | 43.58 | 41.05 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 56.42 | 38.85 |
| TraesCS2B01G375800.1 | Wheat | golgi | 34.64 | 32.98 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G416300.1 | EnsemblPlantsGene:TraesCS5B01G416300 | InterPro:DUF1068 | ncoils:Coil | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF11 |
| PFAM:PF06364 | SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr5B:-:590805578..590807808
Molecular Weight (calculated)
19218.6 Da
IEP (calculated)
4.708
GRAVY (calculated)
-0.426
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRSSSSSS SWGPSPAAAT ALVALLGLGV AAYIVGPPLY WHVAEALGRS AGACPACACD CDALPLLQLP EDCAKQFKEV KSGASGEETE LLIEELKQRE
101: EEATEAQQQA DVKLLEAKKL ASQYQKEADK CSSGMDTCEE AREKSAESLL GQRKLTALWE ERARELGWKP GNVNLHRNQ
101: EEATEAQQQA DVKLLEAKKL ASQYQKEADK CSSGMDTCEE AREKSAESLL GQRKLTALWE ERARELGWKP GNVNLHRNQ
001: MARHTAALKI GLALLGLSMA GYILGPPLYW HLTEALAAVS ASSCPSCPCE CSTYSAVTIP KELSNASFAD CAKHDPEVNE DTEKNYAELL TEELKLREAE
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA
Arabidopsis Description
At1g05070/T7A14_6 [Source:UniProtKB/TrEMBL;Acc:Q94AB8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.