Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 5
- vacuole 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005603.1-P | Field mustard | extracellular | 100.0 | 100.0 |
| CDY12195 | Canola | extracellular | 99.45 | 99.45 |
| AT2G32580.1 | Thale cress | extracellular | 89.62 | 89.62 |
| CDY53389 | Canola | extracellular | 63.93 | 78.0 |
| CDY18288 | Canola | extracellular | 63.39 | 77.33 |
| VIT_12s0059g01040.t01 | Wine grape | extracellular, plasma membrane | 69.4 | 63.82 |
| KRH56166 | Soybean | endoplasmic reticulum | 63.93 | 62.57 |
| KRH25351 | Soybean | endoplasmic reticulum | 63.39 | 61.38 |
| KRH22588 | Soybean | extracellular | 61.2 | 58.95 |
| Solyc07g049730.2.1 | Tomato | nucleus | 61.75 | 57.36 |
| PGSC0003DMT400002793 | Potato | extracellular, mitochondrion, plasma membrane, plastid | 61.75 | 57.36 |
| CDY21300 | Canola | nucleus | 46.45 | 54.84 |
| TraesCS5B01G416100.1 | Wheat | cytosol, mitochondrion, nucleus | 34.43 | 54.31 |
| TraesCS5A01G412400.1 | Wheat | cytosol, mitochondrion, nucleus | 33.88 | 53.45 |
| TraesCS5D01G421600.1 | Wheat | cytosol, mitochondrion, nucleus | 32.24 | 53.15 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 54.64 | 52.91 |
| CDX90862 | Canola | extracellular | 50.27 | 52.57 |
| CDX90859 | Canola | extracellular | 50.27 | 52.57 |
| CDX94551 | Canola | extracellular, golgi, vacuole | 50.82 | 52.25 |
| TraesCS5D01G421400.1 | Wheat | endoplasmic reticulum, plasma membrane | 49.73 | 51.12 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 49.73 | 50.84 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 50.82 | 50.27 |
| TraesCS5A01G412700.1 | Wheat | endoplasmic reticulum, plasma membrane | 48.63 | 50.0 |
| TraesCS5A01G412800.1 | Wheat | extracellular, plasma membrane | 48.09 | 49.44 |
| TraesCS5A01G412200.1 | Wheat | plastid | 49.73 | 49.19 |
| HORVU5Hr1G099550.1 | Barley | endoplasmic reticulum, plasma membrane | 49.18 | 49.18 |
| TraesCS5B01G416300.1 | Wheat | endoplasmic reticulum, plasma membrane | 48.09 | 49.16 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 48.63 | 48.63 |
| Zm00001d034279_P001 | Maize | extracellular | 47.54 | 48.33 |
| CDY13405 | Canola | cytosol | 28.96 | 43.44 |
| CDY23272 | Canola | extracellular, golgi | 39.34 | 41.86 |
| CDX72284 | Canola | extracellular, golgi | 39.34 | 41.62 |
| CDX68715 | Canola | extracellular, golgi | 38.8 | 41.28 |
| CDY28236 | Canola | extracellular, golgi | 38.8 | 41.04 |
| CDY51486 | Canola | extracellular, golgi | 38.25 | 40.7 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 55.74 | 39.23 |
| HORVU5Hr1G099640.1 | Barley | extracellular, mitochondrion, plasma membrane, plastid | 45.36 | 38.07 |
Protein Annotations
| EnsemblPlants:CDY61410 | EnsemblPlantsGene:GSBRNA2T00033788001 | InterPro:DUF1068 | ncoils:Coil | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF11 |
| PFAM:PF06364 | ProteinID:CDY61410 | ProteinID:CDY61410.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00025477C8 |
| UniProt:A0A078JAW1 | MapMan:35.2 | : | : | : | : |
Description
BnaA05g35200DBnaA05g35200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAW1]
Coordinates
chrLK033993:-:29726..30930
Molecular Weight (calculated)
19984.9 Da
IEP (calculated)
7.750
GRAVY (calculated)
-0.497
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKHTAALKA GLTLLALSMI GYILGPPLYW HLTEALVASA SSCSPCVCDC SSLPLLTIPK GLSNGSFGDC AKHDPEVNED TEKNYAELLT EELKQREAAS
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KSEKALVEQK KLTSMWELRA RQKGWKEGAT KSSVKSKSSV QAS
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KSEKALVEQK KLTSMWELRA RQKGWKEGAT KSSVKSKSSV QAS
001: MAKHTAALKV GLALLALSMI GYILGPPLYW HLTEALAVSA TSCSACVCDC SSLPLLTIPT GLSNGSFTDC AKRDPEVNED TEKNYAELLT EELKQREAAS
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KAEKALVEQK KLTSMWEQRA RQKGYKDGAT KSTVKSKSGT EVA
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KAEKALVEQK KLTSMWEQRA RQKGYKDGAT KSTVKSKSGT EVA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80895]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.