Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026434.1-P | Field mustard | nucleus | 91.31 | 91.31 |
| CDX94330 | Canola | nucleus | 81.41 | 82.08 |
| AT4G26455.1 | Thale cress | nucleus | 56.16 | 56.85 |
| CDY17403 | Canola | nucleus | 21.62 | 38.77 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 21.21 | 37.63 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 23.43 | 29.07 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 35.35 | 28.5 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 22.22 | 26.19 |
| CDX82542 | Canola | plastid | 23.03 | 25.73 |
| KRH56393 | Soybean | cytosol | 30.3 | 25.55 |
| KRH62532 | Soybean | endoplasmic reticulum | 29.29 | 24.79 |
| CDY24192 | Canola | plastid | 15.15 | 24.75 |
| PGSC0003DMT400022426 | Potato | nucleus | 29.29 | 24.74 |
| Solyc07g066170.2.1 | Tomato | nucleus | 16.57 | 24.48 |
| HORVU5Hr1G071910.1 | Barley | nucleus | 24.85 | 22.45 |
| Zm00001d020879_P001 | Maize | cytosol, golgi, nucleus, plastid | 18.18 | 22.44 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 26.87 | 22.35 |
| TraesCS5D01G265600.1 | Wheat | nucleus | 24.85 | 22.28 |
| TraesCS5A01G257000.1 | Wheat | cytosol, golgi, nucleus, plastid | 24.44 | 22.2 |
| TraesCS5B01G256500.1 | Wheat | cytosol, golgi, nucleus, plastid | 24.24 | 21.98 |
| EER96942 | Sorghum | cytosol, golgi, nucleus, plastid | 24.04 | 21.96 |
| PGSC0003DMT400056956 | Potato | nucleus | 26.46 | 21.91 |
| Zm00001d005997_P002 | Maize | plastid | 23.43 | 21.56 |
| GSMUA_Achr10P... | Banana | cytosol | 21.82 | 21.43 |
| Os08t0497900-01 | Rice | nucleus | 20.0 | 21.43 |
| Os09t0481300-01 | Rice | nucleus | 22.42 | 21.06 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 24.65 | 20.54 |
| TraesCS2B01G351300.1 | Wheat | cytosol, golgi, nucleus | 12.32 | 20.47 |
| TraesCS7D01G238200.1 | Wheat | cytosol | 22.02 | 20.3 |
| EES14314 | Sorghum | nucleus | 20.61 | 20.16 |
| TraesCS7B01G135800.1 | Wheat | cytosol, golgi, nucleus | 21.82 | 20.07 |
| Os04t0471300-01 | Rice | cytosol, golgi, nucleus | 12.12 | 19.87 |
| TraesCS7A01G240200.1 | Wheat | cytosol | 21.62 | 19.67 |
| HORVU7Hr1G048940.3 | Barley | cytosol | 22.02 | 19.09 |
| Zm00001d003334_P001 | Maize | cytosol, nucleus, plastid | 11.52 | 18.51 |
| HORVU2Hr1G081800.3 | Barley | cytosol, nucleus | 17.17 | 18.4 |
| OQU81760 | Sorghum | nucleus | 15.35 | 17.84 |
| TraesCS2D01G332000.1 | Wheat | cytosol | 18.18 | 17.65 |
| TraesCS2A01G331000.1 | Wheat | cytosol | 17.78 | 17.25 |
| Zm00001d025667_P001 | Maize | cytosol | 15.96 | 16.19 |
Protein Annotations
| EnsemblPlants:CDX89333 | EnsemblPlantsGene:GSBRNA2T00149556001 | ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF1 | ProteinID:CDX89333 |
| ProteinID:CDX89333.1 | SEG:seg | UniParc:UPI0004EE55AB | MapMan:20.4.2.1.2 | : | : |
Description
BnaA01g15600D
Coordinates
chrLK031858:-:962578..964719
Molecular Weight (calculated)
53871.5 Da
IEP (calculated)
4.619
GRAVY (calculated)
-0.668
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLESESSAL ESIGDNGLIQ QASINTAAAA ADDDDNGRSL DQGSFSDDSV KLVSTRSGEN ESSGKALNFD SVGGGSHSPV LSKGRGLRKW RRIRRDLVKD
101: TSGDMENSKV LKRGLSGSAA HSHGNKQMLF QSPEFEQESQ GSVGSVNMLK SGGFDDARFV AGIGFSAGVV GLGKDDDRSS KSSTPVIISS GGQRGKDRVE
201: NSKKHRGESV EKENSHSSLE SDSRKPSGSM MMNHKGMIGD EADMNGETSK RNDDAEGEGE GEESINNNNG FSEEQDPLTE AIDGFLTLQE ALEKEVQQYR
301: EIGKETMAQH HEGASEISSP GSEIVALVNT VGQLEIKLEE TRSMLEVKES HIRELESTTN QNKRSCGESG NVSETVVEDI FRQKIEAEIE YLIYSRSVDN
401: LNHQMKRVET QQSLAEEQAY ETLNSLDKVQ TKAASLRNRA QDLQNECVET TGSIKKRACK ITSCFLIQLV LLLMVVMVFM SQLVPESSDI VVVPT
101: TSGDMENSKV LKRGLSGSAA HSHGNKQMLF QSPEFEQESQ GSVGSVNMLK SGGFDDARFV AGIGFSAGVV GLGKDDDRSS KSSTPVIISS GGQRGKDRVE
201: NSKKHRGESV EKENSHSSLE SDSRKPSGSM MMNHKGMIGD EADMNGETSK RNDDAEGEGE GEESINNNNG FSEEQDPLTE AIDGFLTLQE ALEKEVQQYR
301: EIGKETMAQH HEGASEISSP GSEIVALVNT VGQLEIKLEE TRSMLEVKES HIRELESTTN QNKRSCGESG NVSETVVEDI FRQKIEAEIE YLIYSRSVDN
401: LNHQMKRVET QQSLAEEQAY ETLNSLDKVQ TKAASLRNRA QDLQNECVET TGSIKKRACK ITSCFLIQLV LLLMVVMVFM SQLVPESSDI VVVPT
001: MDLESESSAL ESVDDNVLIQ QSASNVCDDG RSLDNGSCSD ESVKLLSTSN SVELGKPMSF DSPGDGGGAY SPVLKGQGLR KWRRIRRDLV KDTSANMENS
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
Arabidopsis Description
WIP1WPP domain-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.