CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 6
endoplasmic reticulum 6
vacuole 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX84933
CDX88803
CDX92368
CDX98596
CDX99411
CDY01565
CDY03907
CDY09128
CDY15722
CDY27605
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50430.1	CDX84933	AT1G27300.1	21798944
AT1G50430.1	CDY03907	AT1G27300.1	21798944
AT1G50430.1	CDY15722	AT1G27300.1	21798944
AT1G50430.1	CDY27605	AT1G27300.1	21798944
AT1G50430.1	CDX78905	AT4G19030.1	21798944
AT1G50430.1	CDX98596	AT4G19030.1	21798944
AT1G50430.1	CDX99411	AT4G19030.1	21798944
AT1G50430.1	CDY01565	AT4G19030.1	21798944
AT1G50430.1	CDX70995	AT5G22290.1	21798944
AT1G50430.1	CDX88803	AT5G22290.1	21798944
AT1G50430.1	CDX92368	AT5G22290.1	21798944
AT1G50430.1	CDY09128	AT5G22290.1	21798944
AT1G50430.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030492.1-P	Field mustard	extracellular, plasma membrane	15.21	34.06
CDY03603	Canola	plasma membrane	42.72	30.56
CDY45061	Canola	plasma membrane	42.72	30.56
AT1G50430.1	Thale cress	plasma membrane	42.39	30.32
VIT_09s0054g00930.t01	Wine grape	plasma membrane	42.39	30.18
PGSC0003DMT400038174	Potato	mitochondrion, plasma membrane	39.48	28.11
CDY29319	Canola	plasma membrane	37.54	27.88
GSMUA_Achr6P30910_001	Banana	plasma membrane	39.16	27.88
Solyc01g009310.2.1	Tomato	nucleus, plasma membrane	39.16	27.88
KRH44662	Soybean	endoplasmic reticulum	38.84	27.78
Os02t0465400-01	Rice	plasma membrane	39.81	27.33
EES05015	Sorghum	plasma membrane	39.16	26.65
TraesCS3A01G488600.1	Wheat	plasma membrane	38.84	26.43
TraesCS3D01G484700.1	Wheat	golgi, peroxisome, plasma membrane	38.84	26.32
TraesCS3B01G536500.1	Wheat	plasma membrane	38.84	26.32
Zm00001d016463_P001	Maize	plastid	39.16	26.08
PGSC0003DMT400015184	Potato	plasma membrane	36.25	25.81
Solyc06g074090.2.1	Tomato	nucleus	35.92	25.58
HORVU3Hr1G107040.11	Barley	plastid	37.86	21.91
CDX67551	Canola	endoplasmic reticulum, extracellular	6.15	13.01
CDX76247	Canola	plasma membrane	14.56	12.68
CDY66282	Canola	plasma membrane	14.24	11.96
CDY70397	Canola	endoplasmic reticulum, plasma membrane	14.24	11.92
CDY13326	Canola	plasma membrane	8.09	10.82
CDX67552	Canola	endoplasmic reticulum, plasma membrane, vacuole	8.09	10.82
CDY07287	Canola	endoplasmic reticulum, plasma membrane, vacuole	0.65	1.39

Protein Annotations

EnsemblPlants:CDY07286	EnsemblPlantsGene:GSBRNA2T00124166001	GO:A0A078F1L7	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Ergosterol_biosynth_ERG4_ERG24	PANTHER:PTHR21257	PANTHER:PTHR21257:SF38	PFAM:PF01222	ProteinID:CDY07286	ProteinID:CDY07286.1
SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0004EEE147	UniProt:A0A078F1L7	MapMan:50.1.3

Description

BnaC05g26480DBnaC05g26480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F1L7]

Coordinates

chrLK031977:-:121396..123797

Molecular Weight (calculated)

35412.1 Da

IEP (calculated)

9.448

GRAVY (calculated)

-0.044

Length

309 amino acids

Sequence
(BLAST)

001: MFLKLVVMLH LHQVILVHVG MELYPRIGKN FDIKVFTNCR FGMMSWAVLA VTYCIKQYEI NGRVSDSMLV NTILMLVYVT KFFGWEAGYW NSMDIAHDRA
101: GFYICWGFKL GTQLAIYILV AGILCIYINY DCDRQRQEFK RTNGKCSVGL IRRDRHVGHV IWIVLVRLRR YAKQNGGNSY LTVTEFINCL AVTGSSYRVV
201: TEQFGGWLLS RLLNCWRSWE SREKGARGWL ERLGGGYVRL SNCPVSFNEI SADQRRDISA LYGSGETRER DILREGDSDR KDRESWPEGG SGSQLLAAGL
301: SGALRLRLI

Best Arabidopsis Sequence Match ( AT1G50430.2 )
(BLAST)

001: MAETVHSPIV TYASMLSLLA FCPPFVILLW YTMVHQDGSV TQTFGFFWEN GVQGLINIWP RPTLIAWKII FCYGAFEAIL QLLLPGKRVE GPISPAGNRP
101: VYKANGLAAY FVTLATYLGL WFGIFNPAIV YDHLGEIFSA LIFGSFIFCV LLYIKGHVAP SSSDSGSCGN LIIDFYWGME LYPRIGKSFD IKVFTNCRFG
201: MMSWAVLAVT YCIKQYEING KVSDSMLVNT ILMLVYVTKF FWWEAGYWNT MDIAHDRAGF YICWGCLVWV PSVYTSPGMY LVNHPVELGT QLAIYILVAG
301: ILCIYINYDC DRQRQEFRRT NGKCLVWGRA PSKIVASYTT TSGETKTSLL LTSGWWGLAR HFHYVPEILS AFFWTVPALF DNFLAYFYVI FLTLLLFDRA
401: KRDDDRCRSK YGKYWKLYCE KVKYRIIPGI Y

Arabidopsis Description

DWF57-dehydrocholesterol reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.