Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- extracellular 1
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G346700.1 | |
| TraesCS2B01G365000.1 | |
| TraesCS2D01G345400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50430.1 | TraesCS2A01G346700.1 | AT1G27300.1 | 21798944 |
| AT1G50430.1 | TraesCS2B01G365000.1 | AT1G27300.1 | 21798944 |
| AT1G50430.1 | TraesCS2D01G345400.1 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G484700.1 | Wheat | golgi, peroxisome, plasma membrane | 97.37 | 97.37 |
| TraesCS3A01G488600.1 | Wheat | plasma membrane | 96.05 | 96.48 |
| EES05015 | Sorghum | plasma membrane | 85.75 | 86.12 |
| Os02t0465400-01 | Rice | plasma membrane | 84.87 | 86.0 |
| Bra030492.1-P | Field mustard | extracellular, plasma membrane | 25.22 | 83.33 |
| Zm00001d016463_P001 | Maize | plastid | 84.21 | 82.76 |
| GSMUA_Achr6P30910_001 | Banana | plasma membrane | 78.29 | 82.26 |
| VIT_09s0054g00930.t01 | Wine grape | plasma membrane | 76.97 | 80.88 |
| KRH44662 | Soybean | endoplasmic reticulum | 75.44 | 79.63 |
| CDY03603 | Canola | plasma membrane | 75.22 | 79.4 |
| Bra014252.1-P | Field mustard | plasma membrane | 75.0 | 79.17 |
| CDY45061 | Canola | plasma membrane | 75.0 | 79.17 |
| AT1G50430.1 | Thale cress | plasma membrane | 75.0 | 79.17 |
| PGSC0003DMT400038174 | Potato | mitochondrion, plasma membrane | 75.22 | 79.03 |
| Solyc01g009310.2.1 | Tomato | nucleus, plasma membrane | 75.0 | 78.8 |
| Solyc06g074090.2.1 | Tomato | nucleus | 73.03 | 76.73 |
| HORVU3Hr1G107040.11 | Barley | plastid | 89.47 | 76.4 |
| PGSC0003DMT400015184 | Potato | plasma membrane | 72.37 | 76.04 |
| CDY29319 | Canola | plasma membrane | 60.53 | 66.35 |
| Bra041028.1-P | Field mustard | plasma membrane | 48.68 | 64.91 |
| CDY07287 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 15.35 | 48.61 |
| CDY07286 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 26.32 | 38.84 |
| TraesCS1B01G446300.1 | Wheat | plasma membrane | 22.37 | 26.42 |
Protein Annotations
| MapMan:5.5.1.6 | InterPro:Ergosterol_biosynth_ERG4_ERG24 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016628 | GO:GO:0055114 | PFAM:PF01222 | ScanProsite:PS01017 |
| ScanProsite:PS01018 | PANTHER:PTHR21257 | PANTHER:PTHR21257:SF38 | InterPro:Sterol_reductase_CS | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS3B01G536500 |
| EnsemblPlants:TraesCS3B01G536500.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:776356300..776361279
Molecular Weight (calculated)
51737.0 Da
IEP (calculated)
8.975
GRAVY (calculated)
0.185
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKQKQQQPK PGPAAADAAP PPREFKTAHS PWFTYASMAT LFSLCPPFVI LLWYTVAHAD GSVARTYEHL RDRGILEGLK AVWPMPTLVA GKIILGFALF
101: EAALQLLLPG KRFEGPISPA GNVPVYKANG LLAYAVTLVT YLSLWWFGIF NPAIVYDHLG EIYSALVFGS LVFCLCLYIK GHVAPSSSDS GSSGNAFIDF
201: YWGMELYPRI GKHFDIKVFT NCRFGMMSWA VLAVTYCIKQ YEMNGRVADS MLVNTALMLI YITKFFWWES GYWCTMDIAH DRAGFYICWG CLVWVPSTYT
301: SPGMYLVNHP VNLGPQLAIS ILLAGILCIY INYDCDRQRQ EFRRTNGKAS VWGKAPSKIV ASYQTTKGET KTSLLLTSGW WGFSRHFHYV PEILAAFFWS
401: VPALFDHFLP YFYVLHLTIL LLDRAKRDDD RCSTKYGKYW KMYCNRVPYR VVPGIY
101: EAALQLLLPG KRFEGPISPA GNVPVYKANG LLAYAVTLVT YLSLWWFGIF NPAIVYDHLG EIYSALVFGS LVFCLCLYIK GHVAPSSSDS GSSGNAFIDF
201: YWGMELYPRI GKHFDIKVFT NCRFGMMSWA VLAVTYCIKQ YEMNGRVADS MLVNTALMLI YITKFFWWES GYWCTMDIAH DRAGFYICWG CLVWVPSTYT
301: SPGMYLVNHP VNLGPQLAIS ILLAGILCIY INYDCDRQRQ EFRRTNGKAS VWGKAPSKIV ASYQTTKGET KTSLLLTSGW WGFSRHFHYV PEILAAFFWS
401: VPALFDHFLP YFYVLHLTIL LLDRAKRDDD RCSTKYGKYW KMYCNRVPYR VVPGIY
001: MAETVHSPIV TYASMLSLLA FCPPFVILLW YTMVHQDGSV TQTFGFFWEN GVQGLINIWP RPTLIAWKII FCYGAFEAIL QLLLPGKRVE GPISPAGNRP
101: VYKANGLAAY FVTLATYLGL WWFGIFNPAI VYDHLGEIFS ALIFGSFIFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM ELYPRIGKSF DIKVFTNCRF
201: GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVELG TQLAIYILVA
301: GILCIYINYD CDRQRQEFRR TNGKCLVWGR APSKIVASYT TTSGETKTSL LLTSGWWGLA RHFHYVPEIL SAFFWTVPAL FDNFLAYFYV IFLTLLLFDR
401: AKRDDDRCRS KYGKYWKLYC EKVKYRIIPG IY
101: VYKANGLAAY FVTLATYLGL WWFGIFNPAI VYDHLGEIFS ALIFGSFIFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM ELYPRIGKSF DIKVFTNCRF
201: GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVELG TQLAIYILVA
301: GILCIYINYD CDRQRQEFRR TNGKCLVWGR APSKIVASYT TTSGETKTSL LLTSGWWGLA RHFHYVPEIL SAFFWTVPAL FDNFLAYFYV IFLTLLLFDR
401: AKRDDDRCRS KYGKYWKLYC EKVKYRIIPG IY
Arabidopsis Description
DWF57-dehydrocholesterol reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.