Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- golgi 2
- extracellular 1
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d016570_P001 | |
| Zm00001d050563_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50430.1 | Zm00001d016570_P001 | AT1G27300.1 | 21798944 |
| AT1G50430.1 | Zm00001d050563_P001 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05015 | Sorghum | plasma membrane | 90.95 | 92.95 |
| Os02t0465400-01 | Rice | plasma membrane | 87.28 | 90.0 |
| TraesCS3A01G488600.1 | Wheat | plasma membrane | 82.97 | 84.8 |
| TraesCS3D01G484700.1 | Wheat | golgi, peroxisome, plasma membrane | 82.97 | 84.43 |
| TraesCS3B01G536500.1 | Wheat | plasma membrane | 82.76 | 84.21 |
| GSMUA_Achr6P30910_001 | Banana | plasma membrane | 78.66 | 84.1 |
| Bra030492.1-P | Field mustard | extracellular, plasma membrane | 24.78 | 83.33 |
| CDY03603 | Canola | plasma membrane | 76.94 | 82.64 |
| Bra014252.1-P | Field mustard | plasma membrane | 76.72 | 82.41 |
| CDY45061 | Canola | plasma membrane | 76.72 | 82.41 |
| VIT_09s0054g00930.t01 | Wine grape | plasma membrane | 76.72 | 82.03 |
| AT1G50430.1 | Thale cress | plasma membrane | 76.29 | 81.94 |
| KRH44662 | Soybean | endoplasmic reticulum | 75.65 | 81.25 |
| PGSC0003DMT400038174 | Potato | mitochondrion, plasma membrane | 74.35 | 79.49 |
| Solyc01g009310.2.1 | Tomato | nucleus, plasma membrane | 74.35 | 79.49 |
| PGSC0003DMT400015184 | Potato | plasma membrane | 70.47 | 75.35 |
| Solyc06g074090.2.1 | Tomato | nucleus | 70.47 | 75.35 |
| HORVU3Hr1G107040.11 | Barley | plastid | 84.27 | 73.22 |
| CDY29319 | Canola | plasma membrane | 60.56 | 67.55 |
| Bra041028.1-P | Field mustard | plasma membrane | 47.2 | 64.04 |
| CDY07287 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 15.52 | 50.0 |
| CDY07286 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 26.08 | 39.16 |
| Zm00001d006889_P004 | Maize | plastid | 21.77 | 23.17 |
Protein Annotations
| Gene3D:1.20.120.1630 | EntrezGene:100282098 | MapMan:5.5.1.6 | UniProt:A0A1D6H7Y1 | ProteinID:AQK70867.1 | InterPro:Ergosterol_biosynth_ERG4_ERG24 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009918 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016132 | GO:GO:0016628 | GO:GO:0055114 |
| PFAM:PF01222 | ScanProsite:PS01017 | ScanProsite:PS01018 | PANTHER:PTHR21257 | PANTHER:PTHR21257:SF38 | InterPro:Sterol_reductase_CS |
| TMHMM:TMhelix | UniParc:UPI000842EDF2 | EnsemblPlantsGene:Zm00001d016463 | EnsemblPlants:Zm00001d016463_P001 | EnsemblPlants:Zm00001d016463_T001 | SEG:seg |
Description
7-dehydrocholesterol reductase
Coordinates
chr5:+:163215272..163224462
Molecular Weight (calculated)
53112.2 Da
IEP (calculated)
8.844
GRAVY (calculated)
0.305
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSQIGIGNT HSVTPLQRCF LSQVASPYCR PLLLLSSHLT THRSPMLALL SLCPPFVILL WYTMVHADGS VVRTYEHLRD HGVLEGLKAI WPMPTLVAWK
101: IIFGFGLFEA VLQLLLPGKR FEGPISPAGN VPVYKANGLQ AYAVTLITYL GLWWFGIFNP AIVYDHLGEI YSALVFGSFV FCIFLYIKGH VFPSSSDSGS
201: SGNVIIDFYW GMELYPRIGK YFDIKVFTNC RFGMMSWAVL AVTYCIKQYE MNGRVADSML VNTALMLIYI TKFFWWESGY WCTMDIAHDR AGFYICWGCL
301: VWVPSIYTSP GMYLVNHPLN LGPQLALSIL LAGMLCIYIN YDCDRQRQEF RRTNGKCSVW GKAPSKIVAS YQTTKGETKT SLLLTSGWWG LSRHFHYVPE
401: ILSAFFWTVP ALFNHFLPYF YVIFLTILLF DRAKRDDDRC SSKYGKYWKI YCNKVPYRVI PGIY
101: IIFGFGLFEA VLQLLLPGKR FEGPISPAGN VPVYKANGLQ AYAVTLITYL GLWWFGIFNP AIVYDHLGEI YSALVFGSFV FCIFLYIKGH VFPSSSDSGS
201: SGNVIIDFYW GMELYPRIGK YFDIKVFTNC RFGMMSWAVL AVTYCIKQYE MNGRVADSML VNTALMLIYI TKFFWWESGY WCTMDIAHDR AGFYICWGCL
301: VWVPSIYTSP GMYLVNHPLN LGPQLALSIL LAGMLCIYIN YDCDRQRQEF RRTNGKCSVW GKAPSKIVAS YQTTKGETKT SLLLTSGWWG LSRHFHYVPE
401: ILSAFFWTVP ALFNHFLPYF YVIFLTILLF DRAKRDDDRC SSKYGKYWKI YCNKVPYRVI PGIY
001: MAETVHSPIV TYASMLSLLA FCPPFVILLW YTMVHQDGSV TQTFGFFWEN GVQGLINIWP RPTLIAWKII FCYGAFEAIL QLLLPGKRVE GPISPAGNRP
101: VYKANGLAAY FVTLATYLGL WWFGIFNPAI VYDHLGEIFS ALIFGSFIFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM ELYPRIGKSF DIKVFTNCRF
201: GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVELG TQLAIYILVA
301: GILCIYINYD CDRQRQEFRR TNGKCLVWGR APSKIVASYT TTSGETKTSL LLTSGWWGLA RHFHYVPEIL SAFFWTVPAL FDNFLAYFYV IFLTLLLFDR
401: AKRDDDRCRS KYGKYWKLYC EKVKYRIIPG IY
101: VYKANGLAAY FVTLATYLGL WWFGIFNPAI VYDHLGEIFS ALIFGSFIFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM ELYPRIGKSF DIKVFTNCRF
201: GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVELG TQLAIYILVA
301: GILCIYINYD CDRQRQEFRR TNGKCLVWGR APSKIVASYT TTSGETKTSL LLTSGWWGLA RHFHYVPEIL SAFFWTVPAL FDNFLAYFYV IFLTLLLFDR
401: AKRDDDRCRS KYGKYWKLYC EKVKYRIIPG IY
Arabidopsis Description
DWF57-dehydrocholesterol reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.