Factsheet for Solyc06g074090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 1
extracellular 4
golgi 4
plasma membrane 6
endoplasmic reticulum 6
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc05g015640.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50430.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT1G50430.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT1G50430.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT1G50430.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT1G50430.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015184	Potato	plasma membrane	97.7	97.7
Solyc01g009310.2.1	Tomato	nucleus, plasma membrane	83.41	83.41
VIT_09s0054g00930.t01	Wine grape	plasma membrane	81.8	81.8
Bra030492.1-P	Field mustard	extracellular, plasma membrane	25.35	79.71
CDY03603	Canola	plasma membrane	78.34	78.7
Bra014252.1-P	Field mustard	plasma membrane	78.11	78.47
CDY45061	Canola	plasma membrane	78.11	78.47
AT1G50430.1	Thale cress	plasma membrane	77.65	78.01
KRH44662	Soybean	endoplasmic reticulum	77.65	78.01
GSMUA_Achr6P30910_001	Banana	plasma membrane	77.42	77.42
TraesCS3D01G484700.1	Wheat	golgi, peroxisome, plasma membrane	77.88	74.12
TraesCS3A01G488600.1	Wheat	plasma membrane	76.96	73.57
EES05015	Sorghum	plasma membrane	76.5	73.13
Os02t0465400-01	Rice	plasma membrane	75.81	73.11
TraesCS3B01G536500.1	Wheat	plasma membrane	76.73	73.03
Zm00001d016463_P001	Maize	plastid	75.35	70.47
CDY29319	Canola	plasma membrane	61.75	64.42
HORVU3Hr1G107040.11	Barley	plastid	77.65	63.11
Bra041028.1-P	Field mustard	plasma membrane	46.77	59.36
CDY07287	Canola	endoplasmic reticulum, plasma membrane, vacuole	18.43	55.56
CDY07286	Canola	endoplasmic reticulum, plasma membrane, vacuole	25.58	35.92
Solyc09g009040.2.1	Tomato	plasma membrane	23.5	27.64

Protein Annotations

MapMan:5.5.1.6	InterPro:Ergosterol_biosynth_ERG4_ERG24	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009918	GO:GO:0016020	GO:GO:0016021	GO:GO:0016126	GO:GO:0016132
GO:GO:0016628	GO:GO:0030176	GO:GO:0055114	UniProt:K4C9C7	PFAM:PF01222	ScanProsite:PS01018
PANTHER:PTHR21257	PANTHER:PTHR21257:SF38	EnsemblPlantsGene:Solyc06g074090.2	EnsemblPlants:Solyc06g074090.2.1	InterPro:Sterol_reductase_CS	TMHMM:TMhelix
UniParc:UPI00027663B0	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:45795471..45801398

Molecular Weight (calculated)

49789.0 Da

IEP (calculated)

8.634

GRAVY (calculated)

0.225

Length

434 amino acids

Sequence
(BLAST)

001: MAESQLVHPP LFTYISMITL LTLVPPFVIL MWYTNVHADG SVLQTYNYLK ENGLQGLIDI WPRPTAIAGK IIICYALFEA TLQLLLPGKR VEGPISPTGH
101: RPVYKANGMA AYTVTLITYL SLWWFGIFNP TIVYDHLGEI LSTLNFGSLI FCLFLYIKGH VAPSSTDHGS SGNIIVDYYW GMELYPRIGK HFDIKVFTNC
201: RFGMISWGLL PITYCIKQYE EYGSLSDSML IHTIITLVYV TKFFWWEAGY WNTMDIAHDR AGFYICWGCL VFLPCMYTSP GMYLVKHPVN LGPQLAISIL
301: VAGILCVYIN YDCDRQRQEF RRTNGKALVW GKAPSKIVAS YTTTTGETKT SILLTSGWWG LSRHFHYVPE ILASFFWSVP ALLNHFMPYI YVIYLTGLLL
401: DRAKRDDERC KSKYGKYWKK YCEKVPYRVV PGIY

Best Arabidopsis Sequence Match ( AT1G50430.1 )
(BLAST)

001: MAETVHSPIV TYASMLSLLA FCPPFVILLW YTMVHQDGSV TQTFGFFWEN GVQGLINIWP RPTLIAWKII FCYGAFEAIL QLLLPGKRVE GPISPAGNRP
101: VYKANGLAAY FVTLATYLGL WWFGIFNPAI VYDHLGEIFS ALIFGSFIFC VLLYIKGHVA PSSSDSGSCG NLIIDFYWGM ELYPRIGKSF DIKVFTNCRF
201: GMMSWAVLAV TYCIKQYEIN GKVSDSMLVN TILMLVYVTK FFWWEAGYWN TMDIAHDRAG FYICWGCLVW VPSVYTSPGM YLVNHPVELG TQLAIYILVA
301: GILCIYINYD CDRQRQEFRR TNGKCLVWGR APSKIVASYT TTSGETKTSL LLTSGWWGLA RHFHYVPEIL SAFFWTVPAL FDNFLAYFYV IFLTLLLFDR
401: AKRDDDRCRS KYGKYWKLYC EKVKYRIIPG IY

Arabidopsis Description

DWF57-dehydrocholesterol reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.