Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015077 | Potato | nucleus | 95.35 | 95.59 |
| Solyc11g068750.1.1 | Tomato | nucleus, plasma membrane | 65.04 | 58.85 |
| KRH22653 | Soybean | nucleus | 46.7 | 51.48 |
| VIT_06s0080g00970.t01 | Wine grape | nucleus | 48.17 | 50.77 |
| Solyc03g078120.2.1 | Tomato | cytosol | 15.89 | 43.33 |
| CDX70995 | Canola | cytosol | 34.23 | 41.92 |
| AT5G22290.1 | Thale cress | cytosol | 34.72 | 41.76 |
| CDY09128 | Canola | cytosol | 34.96 | 41.69 |
| CDY35676 | Canola | cytoskeleton, cytosol, nucleus | 34.96 | 41.69 |
| Bra020182.1-P | Field mustard | cytosol | 34.96 | 41.69 |
| CDX88803 | Canola | cytosol | 33.99 | 41.25 |
| CDX92368 | Canola | cytosol | 33.74 | 41.19 |
| Bra002403.1-P | Field mustard | cytosol | 32.52 | 41.05 |
| Bra006619.1-P | Field mustard | cytosol | 33.74 | 40.95 |
| Bra021471.1-P | Field mustard | cytosol, golgi, nucleus | 33.74 | 40.83 |
| CDY20351 | Canola | cytosol, golgi, nucleus | 33.74 | 40.71 |
| CDY34714 | Canola | cytosol, golgi, nucleus | 33.5 | 40.53 |
| AT3G44290.1 | Thale cress | cytosol | 33.01 | 40.3 |
| KRH26664 | Soybean | nucleus | 44.99 | 37.32 |
| CDY34716 | Canola | nucleus | 26.16 | 36.39 |
| Solyc03g098190.2.1 | Tomato | nucleus | 21.03 | 34.54 |
| Solyc08g077110.2.1 | Tomato | nucleus | 21.76 | 26.18 |
| Solyc06g061080.2.1 | Tomato | nucleus | 20.29 | 24.63 |
| Solyc05g055480.2.1 | Tomato | nucleus | 21.52 | 22.8 |
| Solyc11g008010.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 23.96 | 21.08 |
| Solyc02g036430.1.1 | Tomato | nucleus | 25.18 | 18.23 |
| Solyc05g055470.2.1 | Tomato | nucleus | 23.23 | 17.46 |
| Solyc11g008000.1.1 | Tomato | nucleus | 22.25 | 17.23 |
| Solyc06g073050.2.1 | Tomato | nucleus | 24.45 | 16.81 |
| Solyc03g080090.2.1 | Tomato | nucleus | 24.21 | 15.74 |
| Solyc04g072220.2.1 | Tomato | cytosol, nucleus, plastid | 22.74 | 15.53 |
| Solyc12g056790.1.1 | Tomato | nucleus | 21.76 | 15.08 |
| Solyc11g005920.1.1 | Tomato | nucleus | 19.8 | 11.79 |
| Solyc02g081270.2.1 | Tomato | nucleus | 24.94 | 9.91 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:K4C9D5 | InterPro:NAC-dom | InterPro:NAC_dom_sf |
| PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 | PANTHER:PTHR31989:SF40 | SUPFAM:SSF101941 | EnsemblPlantsGene:Solyc06g074170.2 |
| EnsemblPlants:Solyc06g074170.2.1 | TMHMM:TMhelix | UniParc:UPI00027663B7 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6:-:45864309..45868040
Molecular Weight (calculated)
46256.8 Da
IEP (calculated)
8.947
GRAVY (calculated)
-0.552
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MENEHVSSSS RNETTPRNNA NTEISIATAS SMFPGFRFSP TDEELISYYL KKKLEGSDKC VEVISEVEIW KHEPWDLPAK SVIQSDNEWF FFSPRGRKYP
101: NGSQSKRATE SGYWKATGKE RNVKSNSNII GTKRTLVFHT GRAPKGQRTQ WIMHEYCMIG NTNYQDSMVV CRLRKNSEFH LNDTPRNQRN QLVAIESATA
201: LSGAGQLGSL ELVNVGECCS KEGSSSFHSH SVEQIDSGSE SDKPTKEFSH HDSSGHFKDF DVEDDWFADI MKDDIIKLDD SSLNPRPVSM IPDRPESSEI
301: SNHEAQAAMS SVVPFQGTAN RRLRLVREIV MKCGVKESKP YKAIKKNKVG VGTTSSVRWL RNMFSVKWMR QYVITIFVAT LIFLVMLLSL LGVSQQVKQR
401: RHLLVLASS
101: NGSQSKRATE SGYWKATGKE RNVKSNSNII GTKRTLVFHT GRAPKGQRTQ WIMHEYCMIG NTNYQDSMVV CRLRKNSEFH LNDTPRNQRN QLVAIESATA
201: LSGAGQLGSL ELVNVGECCS KEGSSSFHSH SVEQIDSGSE SDKPTKEFSH HDSSGHFKDF DVEDDWFADI MKDDIIKLDD SSLNPRPVSM IPDRPESSEI
301: SNHEAQAAMS SVVPFQGTAN RRLRLVREIV MKCGVKESKP YKAIKKNKVG VGTTSSVRWL RNMFSVKWMR QYVITIFVAT LIFLVMLLSL LGVSQQVKQR
401: RHLLVLASS
001: MSKEAEMSIA VSALFPGFRF SPTDVELISY YLRRKIDGDE NSVAVIAEVE IYKFEPWDLP EESKLKSENE WFYFCARGRK YPHGSQSRRA TQLGYWKATG
101: KERSVKSGNQ VVGTKRTLVF HIGRAPRGER TEWIMHEYCI HGAPQDALVV CRLRKNADFR ASSTQKMEDG VVQDDGYVGQ RGGLEKEDKS YYESEHQIPN
201: GDIAESSNVV EDQADTDDDC YAEILNDDII KLDEEALKAS QAFRPTNPTH QETISSESSS KRSKCGIKKE STETMNCYAL FRIKNVAGTD SSWRFPNPFK
301: IKKDDSQRLM KNVLATTVFL AILFSFFWTV LIARN
101: KERSVKSGNQ VVGTKRTLVF HIGRAPRGER TEWIMHEYCI HGAPQDALVV CRLRKNADFR ASSTQKMEDG VVQDDGYVGQ RGGLEKEDKS YYESEHQIPN
201: GDIAESSNVV EDQADTDDDC YAEILNDDII KLDEEALKAS QAFRPTNPTH QETISSESSS KRSKCGIKKE STETMNCYAL FRIKNVAGTD SSWRFPNPFK
301: IKKDDSQRLM KNVLATTVFL AILFSFFWTV LIARN
Arabidopsis Description
NTL8NAC domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.