Subcellular Localization
min:
: max
Winner_takes_all: extracellular, golgi, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 4
- plasma membrane 4
- extracellular 4
- endoplasmic reticulum 3
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 | |
| Solyc05g015640.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07950.1 | Solyc05g015640.2.1 | AT1G27300.1 | 21798944 |
| AT3G07950.1 | Solyc02g071920.2.1 | AT4G19030.1 | 21798944 |
| AT3G07950.1 | Solyc03g005980.2.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75962 | Soybean | endoplasmic reticulum, vacuole | 36.78 | 62.24 |
| VIT_13s0019g04120.t01 | Wine grape | plasma membrane, plastid | 73.97 | 57.56 |
| KRG91881 | Soybean | extracellular, golgi, plasma membrane | 46.28 | 55.17 |
| KRH08383 | Soybean | plasma membrane | 69.42 | 55.08 |
| HORVU0Hr1G002680.2 | Barley | golgi | 63.22 | 54.64 |
| KRH70041 | Soybean | plasma membrane | 68.59 | 54.25 |
| CDY22146 | Canola | plasma membrane | 66.53 | 54.21 |
| CDY28006 | Canola | plasma membrane | 66.53 | 54.21 |
| CDY35975 | Canola | plasma membrane | 65.7 | 53.54 |
| Bra040042.1-P | Field mustard | plasma membrane | 66.53 | 52.79 |
| Bra029689.1-P | Field mustard | plasma membrane | 66.12 | 52.63 |
| AT3G07950.1 | Thale cress | plasma membrane | 66.12 | 52.63 |
| GSMUA_Achr4P20820_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 67.77 | 51.57 |
| KRH34890 | Soybean | plasma membrane | 69.01 | 51.38 |
| GSMUA_Achr7P01900_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 66.53 | 50.63 |
| Os07t0655400-01 | Rice | plastid | 63.64 | 48.73 |
| TraesCS2D01G138200.1 | Wheat | golgi | 63.22 | 48.73 |
| TraesCS2A01G135700.1 | Wheat | plasma membrane, plastid | 63.22 | 48.73 |
| EER99823 | Sorghum | plasma membrane | 63.22 | 48.57 |
| TraesCS2B01G159600.1 | Wheat | plasma membrane, plastid | 62.81 | 48.41 |
| Os03t0358200-00 | Rice | golgi | 62.4 | 48.09 |
| EER92238 | Sorghum | plastid | 60.33 | 45.48 |
| Zm00001d029226_P001 | Maize | plasma membrane | 59.5 | 42.73 |
| Zm00001d047446_P002 | Maize | plasma membrane, plastid | 58.26 | 40.4 |
| Zm00001d007067_P003 | Maize | plasma membrane | 62.4 | 40.27 |
| Os04t0103300-01 | Rice | peroxisome | 49.59 | 37.74 |
| EES11733 | Sorghum | plasma membrane | 48.76 | 36.99 |
| Zm00001d004543_P001 | Maize | extracellular | 48.76 | 36.76 |
| TraesCS2D01G038700.1 | Wheat | plasma membrane | 48.35 | 36.68 |
| Zm00001d024933_P003 | Maize | plasma membrane | 48.35 | 36.68 |
| TraesCS2B01G053000.1 | Wheat | plasma membrane | 47.93 | 36.59 |
| TraesCS2A01G040100.2 | Wheat | golgi, unclear | 47.93 | 36.36 |
| HORVU2Hr1G006030.4 | Barley | golgi, plasma membrane | 47.93 | 34.83 |
Protein Annotations
| MapMan:19.4.2.6 | InterPro:DUF1751_Mem_euk | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006890 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| UniProt:K4BRP6 | PFAM:PF08551 | PANTHER:PTHR13377 | PANTHER:PTHR13377:SF6 | SMART:SM01160 | SUPFAM:SSF144091 |
| EnsemblPlantsGene:Solyc04g049180.2 | EnsemblPlants:Solyc04g049180.2.1 | TMHMM:TMhelix | UniParc:UPI0002766629 | SEG:seg | : |
Description
Rhomboid-like protein 19 [Source:Projected from Arabidopsis thaliana (AT3G07950) UniProtKB/Swiss-Prot;Acc:Q8LF05]
Coordinates
chr4:+:40029405..40032249
Molecular Weight (calculated)
27336.3 Da
IEP (calculated)
8.355
GRAVY (calculated)
0.169
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYAIISTIG LLFLGKLLEP IWGSREFLKF IFIVNFLTSV FVFITAISLY YVTRLEIYLY MPISGFQGVL SGFLVGVKQI MPDQELSILK LKAKWLPSLA
101: LLFSIAISFF TADSVSYLPT IVFGTYLGWI YLRYWQKKPE TKLKGDPSDE FSFSSFFPEF LRPVIDPIAT IFERMLCGRR SETSNEERGY TLGGSTLPGS
201: DPIEASRRRE RGARALEERL AAELLASGKK GEESERGVND NV
101: LLFSIAISFF TADSVSYLPT IVFGTYLGWI YLRYWQKKPE TKLKGDPSDE FSFSSFFPEF LRPVIDPIAT IFERMLCGRR SETSNEERGY TLGGSTLPGS
201: DPIEASRRRE RGARALEERL AAELLASGKK GEESERGVND NV
001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
Arabidopsis Description
RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.