Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 6
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012567.1-P | |
| Bra013361.1-P | |
| Bra030034.1-P | |
| Bra032817.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07950.1 | Bra030034.1-P | AT1G27300.1 | 21798944 |
| AT3G07950.1 | Bra032817.1-P | AT1G27300.1 | 21798944 |
| AT3G07950.1 | Bra012567.1-P | AT4G19030.1 | 21798944 |
| AT3G07950.1 | Bra013361.1-P | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22146 | Canola | plasma membrane | 97.38 | 100.0 |
| Bra029689.1-P | Field mustard | plasma membrane | 94.1 | 94.41 |
| AT3G07950.1 | Thale cress | plasma membrane | 90.82 | 91.12 |
| KRH08383 | Soybean | plasma membrane | 70.16 | 70.16 |
| KRH70041 | Soybean | plasma membrane | 70.16 | 69.93 |
| VIT_13s0019g04120.t01 | Wine grape | plasma membrane, plastid | 70.16 | 68.81 |
| Solyc04g049180.2.1 | Tomato | extracellular, golgi, vacuole | 52.79 | 66.53 |
| KRH75962 | Soybean | endoplasmic reticulum, vacuole | 29.51 | 62.94 |
| KRH34890 | Soybean | plasma membrane | 66.56 | 62.46 |
| GSMUA_Achr4P20820_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 62.95 | 60.38 |
| GSMUA_Achr7P01900_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 60.98 | 58.49 |
| EER99823 | Sorghum | plasma membrane | 60.33 | 58.41 |
| Os07t0655400-01 | Rice | plastid | 59.67 | 57.59 |
| Os03t0358200-00 | Rice | golgi | 58.03 | 56.37 |
| EER92238 | Sorghum | plastid | 59.02 | 56.07 |
| TraesCS2B01G159600.1 | Wheat | plasma membrane, plastid | 57.7 | 56.05 |
| TraesCS2D01G138200.1 | Wheat | golgi | 57.38 | 55.73 |
| TraesCS2A01G135700.1 | Wheat | plasma membrane, plastid | 57.38 | 55.73 |
| KRG91881 | Soybean | extracellular, golgi, plasma membrane | 36.72 | 55.17 |
| Zm00001d029226_P001 | Maize | plasma membrane | 57.7 | 52.23 |
| Zm00001d047446_P002 | Maize | plasma membrane, plastid | 57.7 | 50.43 |
| HORVU0Hr1G002680.2 | Barley | golgi | 46.23 | 50.36 |
| Zm00001d007067_P003 | Maize | plasma membrane | 59.34 | 48.27 |
| Os04t0103300-01 | Rice | peroxisome | 45.9 | 44.03 |
| TraesCS2A01G040100.2 | Wheat | golgi, unclear | 44.59 | 42.63 |
| TraesCS2D01G038700.1 | Wheat | plasma membrane | 44.59 | 42.63 |
| TraesCS2B01G053000.1 | Wheat | plasma membrane | 43.93 | 42.27 |
| EES11733 | Sorghum | plasma membrane | 43.93 | 42.01 |
| Zm00001d004543_P001 | Maize | extracellular | 43.61 | 41.43 |
| Zm00001d024933_P003 | Maize | plasma membrane | 43.28 | 41.38 |
| HORVU2Hr1G006030.4 | Barley | golgi, plasma membrane | 44.92 | 41.14 |
Protein Annotations
| EnsemblPlants:Bra040042.1 | EnsemblPlants:Bra040042.1-P | EnsemblPlantsGene:Bra040042 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006890 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF1751_Mem_euk | PANTHER:PTHR13377 | PANTHER:PTHR13377:SF6 |
| PFAM:PF08551 | SEG:seg | SMART:SM01160 | SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI000254474D |
| UniProt:M4FG17 | MapMan:19.4.2.6 | : | : | : | : |
Description
AT3G07950 (E=1e-137) | rhomboid protein-related
Coordinates
chrA01:-:27815409..27817460
Molecular Weight (calculated)
34115.9 Da
IEP (calculated)
8.990
GRAVY (calculated)
0.384
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPGITSMF TNFTKLCKGL ALVLVVGHLL VQFVPATVPY LALIPARTIP FGWNLITSGY FELSVHGVVI STVSLLFMGK FLEPVWGSKE FLKFIFVVNF
101: LTYLCVFVTA IALYYITRLE IYLYMPFAGF HGVLAGLLVG IKQIIPDQEV LLVKIKAKWL PSITLVLSIA SSFFTLNSAA YLPTLIFGTY MGWLYLRYFQ
201: RRTETKLRGD PSDDFAFSTF FPELLRPIID PIASIFHRML CGRSNATSED HGYTTSGAPL PGSDSAEASR RRERGARALE ERLATERLVP PRNKEELQSD
301: ALDSV
101: LTYLCVFVTA IALYYITRLE IYLYMPFAGF HGVLAGLLVG IKQIIPDQEV LLVKIKAKWL PSITLVLSIA SSFFTLNSAA YLPTLIFGTY MGWLYLRYFQ
201: RRTETKLRGD PSDDFAFSTF FPELLRPIID PIASIFHRML CGRSNATSED HGYTTSGAPL PGSDSAEASR RRERGARALE ERLATERLVP PRNKEELQSD
301: ALDSV
001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
Arabidopsis Description
RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.