Factsheet for Zm00001d004543_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
peroxisome 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, peroxisome, plasma membrane, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016570_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07950.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT3G07950.1	Zm00001d050563_P001	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024933_P003	Maize	plasma membrane	96.26	96.87
EES11733	Sorghum	plasma membrane	95.95	96.55
TraesCS2A01G040100.2	Wheat	golgi, unclear	87.23	87.77
TraesCS2D01G038700.1	Wheat	plasma membrane	86.6	87.15
Os04t0103300-01	Rice	peroxisome	86.29	87.11
TraesCS2B01G053000.1	Wheat	plasma membrane	85.67	86.75
HORVU2Hr1G006030.4	Barley	golgi, plasma membrane	81.0	78.08
Solyc04g049180.2.1	Tomato	extracellular, golgi, vacuole	36.76	48.76
KRH08383	Soybean	plasma membrane	43.3	45.57
KRH70041	Soybean	plasma membrane	43.3	45.42
VIT_13s0019g04120.t01	Wine grape	plasma membrane, plastid	43.61	45.02
CDY22146	Canola	plasma membrane	41.43	44.78
CDY28006	Canola	plasma membrane	41.12	44.44
CDY35975	Canola	plasma membrane	41.12	44.44
Bra029689.1-P	Field mustard	plasma membrane	41.74	44.08
AT3G07950.1	Thale cress	plasma membrane	41.74	44.08
Bra040042.1-P	Field mustard	plasma membrane	41.43	43.61
KRH34890	Soybean	plasma membrane	43.93	43.38
Zm00001d029226_P001	Maize	plasma membrane	42.06	40.06
KRH75962	Soybean	endoplasmic reticulum, vacuole	17.76	39.86
Zm00001d047446_P002	Maize	plasma membrane, plastid	43.3	39.83
Zm00001d007067_P003	Maize	plasma membrane	43.93	37.6
KRG91881	Soybean	extracellular, golgi, plasma membrane	23.05	36.45

Protein Annotations

EntrezGene:100216993	MapMan:19.4.2.6	UniProt:B4FKV2	EMBL:BT037740	EMBL:BT064936	EMBL:BT065069
InterPro:DUF1751_Mem_euk	GO:GO:0005575	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	ProteinID:ONM19102.1	PFAM:PF08551	PANTHER:PTHR13377	PANTHER:PTHR13377:SF5	SMART:SM01160
SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI00017B6A20	EnsemblPlantsGene:Zm00001d004543	EnsemblPlants:Zm00001d004543_P001	EnsemblPlants:Zm00001d004543_T001
SEG:seg	:	:	:	:	:

Description

Rhomboid-like protein 19

Coordinates

chr2:+:117221421..117225649

Molecular Weight (calculated)

35076.0 Da

IEP (calculated)

7.971

GRAVY (calculated)

0.289

Length

321 amino acids

Sequence
(BLAST)

001: MMESQPLQAP TATAPPPGSA EPAGAPPAVT PGKEFTRTCK GLVVVLIGGY VLLQLLPSSL NYLAIIPSKT IPYVWTVFTA GYIEQVLPGA IGSSLGLLFC
101: GKDIEPAWGR KEFLKFIILI NSICGILAFC FAIGLYYVTG KESFLVTPLS GFHGCLAGFL VALKQLLPNL ELPMCFFWKI KAKWMPFFVV CFSSIMAFIV
201: PDSINFLPTL VSGMYVSWLY LRYFQRNPLT GLKGDPSDDF SFPSLFPAAM RPVTDPVANL FDRMLCARSR PLEVALPISD PTKASRRRER GERVLEERLA
301: ADNAGDTEAS PRGHGHGTAE D

Best Arabidopsis Sequence Match ( AT3G07950.1 )
(BLAST)

001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV

Arabidopsis Description

RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.