Factsheet for Os04t0103300-01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0509600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07950.1	Os02t0509600-01	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G040100.2	Wheat	golgi, unclear	91.51	91.22
TraesCS2D01G038700.1	Wheat	plasma membrane	90.57	90.28
TraesCS2B01G053000.1	Wheat	plasma membrane	89.94	90.22
EES11733	Sorghum	plasma membrane	87.74	87.46
Zm00001d004543_P001	Maize	extracellular	87.11	86.29
Zm00001d024933_P003	Maize	plasma membrane	86.48	86.21
HORVU2Hr1G006030.4	Barley	golgi, plasma membrane	85.22	81.38
Solyc04g049180.2.1	Tomato	extracellular, golgi, vacuole	37.74	49.59
KRH08383	Soybean	plasma membrane	45.91	47.87
KRH70041	Soybean	plasma membrane	45.91	47.71
VIT_13s0019g04120.t01	Wine grape	plasma membrane, plastid	46.54	47.59
CDY22146	Canola	plasma membrane	44.03	47.14
CDY35975	Canola	plasma membrane	43.71	46.8
CDY28006	Canola	plasma membrane	43.71	46.8
Os07t0655400-01	Rice	plastid	45.91	46.2
AT3G07950.1	Thale cress	plasma membrane	44.03	46.05
Bra029689.1-P	Field mustard	plasma membrane	44.03	46.05
Bra040042.1-P	Field mustard	plasma membrane	44.03	45.9
KRH34890	Soybean	plasma membrane	46.86	45.85
Os03t0358200-00	Rice	golgi	44.65	45.22
KRH75962	Soybean	endoplasmic reticulum, vacuole	18.24	40.56
KRG91881	Soybean	extracellular, golgi, plasma membrane	24.53	38.42

Protein Annotations

MapMan:19.4.2.6	EntrezGene:4334896	EMBL:AK061755	EMBL:AK066103	EMBL:AK073274	ProteinID:BAF13913.1
ProteinID:BAS87516.1	InterPro:DUF1751_Mem_euk	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006890	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:Os04g0103300	EnsemblPlants:Os04t0103300-01	PFAM:PF08551	PANTHER:PTHR13377	PANTHER:PTHR13377:SF5	UniProt:Q0JFH4
SMART:SM01160	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0000DD8F02	RefSeq:XP_015636851.1	RefSeq:XP_015636852.1
RefSeq:XP_015636853.1	RefSeq:XP_015636854.1	SEG:seg	:	:	:

Description

Rhomboid 10, RHOMBOID 10Protein of unknown function DUF1751, integral membrane, eukaryotic domain containing protein. (Os04t0103300-01);Protein of unknown function DUF1751, integral membrane, eukaryotic domain containing protein. (Os04t0103300-02);Protein of unknown function DUF1751, integral membrane, eukaryotic domain containing protein. (Os04t0103300-03)

Coordinates

chr4:-:226927..230020

Molecular Weight (calculated)

34787.6 Da

IEP (calculated)

6.131

GRAVY (calculated)

0.368

Length

318 amino acids

Sequence
(BLAST)

001: MMESQALQDP VAEPHGAEPA AAGAPPAVVP GKEFTRTCKG LVVVLVGGYV LLQLLPSSLD YLAIIPAKTI PFVWTVFTAG YIEQVLPGAI GSSLGLLFCG
101: KDIEPVWGRK EFLKFIILVN SICGVLAFCF AVALYYVTGK ESFLVTPLSG FHGALAGFLV GLKQLLPNLE LPMCFFWKIK AKWMPFFVLC FSTIMAFIVP
201: DSINFLPTLL SGMYVSWIYL RYFQRNPLTG LKGDSSDDFS FPSLFPDAMR PVTDPVANLF DRMLCARSRP SELALPVSDP AKASRRRERG ERVLEERLAA
301: DHAADTEAPA LGHSTAED

Best Arabidopsis Sequence Match ( AT3G07950.1 )
(BLAST)

001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV

Arabidopsis Description

RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.