CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
endoplasmic reticulum 2
plasma membrane 4
extracellular 1
vacuole 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH11076
KRH21197
KRH31520
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07950.1	KRG97393	AT1G27300.1	21798944
AT3G07950.1	KRH31520	AT1G27300.1	21798944
AT3G07950.1	KRH76090	AT1G27300.1	21798944
AT3G07950.1	KRH11076	AT4G19030.1	21798944
AT3G07950.1	KRH21197	AT4G19030.1	21798944
AT3G07950.1	KRH42923	AT4G19030.1	21798944
AT3G07950.1	KRH42926	AT4G19030.1	21798944
AT3G07950.1	KRH45251	AT4G19030.1	21798944
AT3G07950.1	KRH59035	AT4G19030.1	21798944
AT3G07950.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08383	Soybean	plasma membrane	97.71	98.03
KRH75962	Soybean	endoplasmic reticulum, vacuole	40.52	86.71
VIT_13s0019g04120.t01	Wine grape	plasma membrane, plastid	74.84	73.63
KRH34890	Soybean	plasma membrane	77.12	72.62
AT3G07950.1	Thale cress	plasma membrane	70.59	71.05
CDY22146	Canola	plasma membrane	68.63	70.71
CDY28006	Canola	plasma membrane	68.3	70.37
CDY35975	Canola	plasma membrane	68.3	70.37
Bra040042.1-P	Field mustard	plasma membrane	69.93	70.16
Bra029689.1-P	Field mustard	plasma membrane	69.28	69.74
Solyc04g049180.2.1	Tomato	extracellular, golgi, vacuole	54.25	68.59
KRG91881	Soybean	extracellular, golgi, plasma membrane	40.85	61.58
GSMUA_Achr7P01900_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	63.73	61.32
GSMUA_Achr4P20820_001	Banana	endoplasmic reticulum, plasma membrane, plastid	63.4	61.01
EER99823	Sorghum	plasma membrane	61.44	59.68
Os07t0655400-01	Rice	plastid	61.11	59.18
TraesCS2B01G159600.1	Wheat	plasma membrane, plastid	59.48	57.96
TraesCS2D01G138200.1	Wheat	golgi	59.15	57.64
TraesCS2A01G135700.1	Wheat	plasma membrane, plastid	59.15	57.64
EER92238	Sorghum	plastid	59.48	56.7
Os03t0358200-00	Rice	golgi	57.52	56.05
Zm00001d029226_P001	Maize	plasma membrane	58.17	52.82
Zm00001d047446_P002	Maize	plasma membrane, plastid	58.5	51.29
HORVU0Hr1G002680.2	Barley	golgi	46.41	50.71
Zm00001d007067_P003	Maize	plasma membrane	60.78	49.6
Os04t0103300-01	Rice	peroxisome	47.71	45.91
TraesCS2D01G038700.1	Wheat	plasma membrane	46.41	44.51
TraesCS2A01G040100.2	Wheat	golgi, unclear	46.08	44.2
EES11733	Sorghum	plasma membrane	45.42	43.57
HORVU2Hr1G006030.4	Barley	golgi, plasma membrane	47.39	43.54
TraesCS2B01G053000.1	Wheat	plasma membrane	45.1	43.53
Zm00001d004543_P001	Maize	extracellular	45.42	43.3
Zm00001d024933_P003	Maize	plasma membrane	45.1	43.26

Protein Annotations

EntrezGene:100777370	MapMan:19.4.2.6	EMBL:ACUP02000745	InterPro:DUF1751_Mem_euk	EnsemblPlantsGene:GLYMA_02G064500	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006890
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	UniProt:I1JCX7	EnsemblPlants:KRH70041	ProteinID:KRH70041
ProteinID:KRH70041.1	ProteinID:KRH70042.1	PFAM:PF08551	PANTHER:PTHR13377	PANTHER:PTHR13377:SF6	SMART:SM01160
SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0002336EF4	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:5771253..5777921

Molecular Weight (calculated)

34333.9 Da

IEP (calculated)

8.290

GRAVY (calculated)

0.313

Length

306 amino acids

Sequence
(BLAST)

001: MSTPALSGGT GLFSGFTRLC KGLAVVLVCG HIAVQFIPSA VNYLALIPAR TIPFAWNLIT AGYVEQSIYG VVVSTLSLLF IGKLLEPIWG SREFFKFIFV
101: VNLLTSVCLF ITAIALYYIT RLETYLYMPL SGFHGVVSGF LVGIKQIIPD QELPFIKIKT KWLPSITVLL SIAISFWTLE ATAYLPTIIS GTYISWIYLR
201: YWQRKPETKH RGDLSEDFAF STFFPEFLRP VIDPIASIFH RMLCGRYDAS NDGQGNSLES EPLPGSDSIE ASRRRERGAR ALEERLAAER LAVARRELQR
301: EAEENV

Best Arabidopsis Sequence Match ( AT3G07950.1 )
(BLAST)

001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV

Arabidopsis Description

RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.