Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 4
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
27297264
plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d016570_P001 | |
| Zm00001d050563_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07950.1 | Zm00001d016570_P001 | AT1G27300.1 | 21798944 |
| AT3G07950.1 | Zm00001d050563_P001 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99823 | Sorghum | plasma membrane | 78.13 | 93.02 |
| Os07t0655400-01 | Rice | plastid | 69.33 | 82.28 |
| TraesCS2B01G159600.1 | Wheat | plasma membrane, plastid | 68.0 | 81.21 |
| TraesCS2A01G135700.1 | Wheat | plasma membrane, plastid | 67.73 | 80.89 |
| TraesCS2D01G138200.1 | Wheat | golgi | 67.73 | 80.89 |
| GSMUA_Achr4P20820_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 60.53 | 71.38 |
| HORVU0Hr1G002680.2 | Barley | golgi | 51.47 | 68.93 |
| GSMUA_Achr7P01900_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 57.33 | 67.61 |
| Zm00001d029226_P001 | Maize | plasma membrane | 60.53 | 67.36 |
| Zm00001d047446_P002 | Maize | plasma membrane, plastid | 61.87 | 66.48 |
| VIT_13s0019g04120.t01 | Wine grape | plasma membrane, plastid | 52.0 | 62.7 |
| Solyc04g049180.2.1 | Tomato | extracellular, golgi, vacuole | 40.27 | 62.4 |
| KRH08383 | Soybean | plasma membrane | 49.87 | 61.31 |
| KRH70041 | Soybean | plasma membrane | 49.6 | 60.78 |
| CDY22146 | Canola | plasma membrane | 48.0 | 60.61 |
| Bra040042.1-P | Field mustard | plasma membrane | 48.27 | 59.34 |
| CDY35975 | Canola | plasma membrane | 46.67 | 58.92 |
| CDY28006 | Canola | plasma membrane | 46.67 | 58.92 |
| Bra029689.1-P | Field mustard | plasma membrane | 46.93 | 57.89 |
| AT3G07950.1 | Thale cress | plasma membrane | 46.93 | 57.89 |
| KRH34890 | Soybean | plasma membrane | 49.87 | 57.54 |
| KRH75962 | Soybean | endoplasmic reticulum, vacuole | 19.73 | 51.75 |
| KRG91881 | Soybean | extracellular, golgi, plasma membrane | 26.67 | 49.26 |
| Zm00001d004543_P001 | Maize | extracellular | 37.6 | 43.93 |
| Zm00001d024933_P003 | Maize | plasma membrane | 37.33 | 43.89 |
Protein Annotations
| EnsemblPlants:Zm00001d007067_P003 | EnsemblPlants:Zm00001d007067_T003 | EnsemblPlantsGene:Zm00001d007067 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006890 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF1751_Mem_euk | PANTHER:PTHR13377 | PANTHER:PTHR13377:SF6 |
| PFAM:PF08551 | ProteinID:ONM25709.1 | SEG:seg | SMART:SM01160 | SUPFAM:SSF144091 | TMHMM:TMhelix |
| UniParc:UPI000221E7F6 | UniProt:A0A1D6F2Q3 | MapMan:19.4.2.6 | : | : | : |
Description
Transmembrane protein 115
Coordinates
chr2:-:221307288..221311112
Molecular Weight (calculated)
41507.8 Da
IEP (calculated)
9.020
GRAVY (calculated)
0.284
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MFFALNLVVN QTHLSCSVQT HPDFRVPTPT ALLALHSANS FRGDPEQETQ QRGGSRRAAA ATMMSGSSPP PPSLPAGSGG FFRGYTKLCK GLAVILLIVH
101: LVVQLFPSAV TYLALIPGRT IPFAWNLITA GYVEQTIPGM VVSIIGLLLF GKLLEPLWGS KELSKFIFIV NLSTSACVFM TAIVLYYITQ QEIYLYTPFS
201: GFYGVLSGLL VGIKQLLPDQ ELNLFVLKIK AKWIPSLVAL ISILGSIFIY DFMSYLPVLL FGMYMSWIYL RYFQKRLETS LKGDPSEEFS FSSFFPEFVR
301: PFLDPIASVF HRLLCGRSDA RGETLDTSPL PGSDSFEANR RRERGQRALE QRLAEKLAAV RSSEGGTSLD AADKV
101: LVVQLFPSAV TYLALIPGRT IPFAWNLITA GYVEQTIPGM VVSIIGLLLF GKLLEPLWGS KELSKFIFIV NLSTSACVFM TAIVLYYITQ QEIYLYTPFS
201: GFYGVLSGLL VGIKQLLPDQ ELNLFVLKIK AKWIPSLVAL ISILGSIFIY DFMSYLPVLL FGMYMSWIYL RYFQKRLETS LKGDPSEEFS FSSFFPEFVR
301: PFLDPIASVF HRLLCGRSDA RGETLDTSPL PGSDSFEANR RRERGQRALE QRLAEKLAAV RSSEGGTSLD AADKV
001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
Arabidopsis Description
RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.