Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- endoplasmic reticulum 2
- plasma membrane 4
- extracellular 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g03800.t01 | |
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07950.1 | VIT_01s0010g03800.t01 | AT1G27300.1 | 21798944 |
| AT3G07950.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH08383 | Soybean | plasma membrane | 73.95 | 75.41 |
| KRH70041 | Soybean | plasma membrane | 73.63 | 74.84 |
| Solyc04g049180.2.1 | Tomato | extracellular, golgi, vacuole | 57.56 | 73.97 |
| CDY28006 | Canola | plasma membrane | 68.49 | 71.72 |
| CDY35975 | Canola | plasma membrane | 68.49 | 71.72 |
| Bra029689.1-P | Field mustard | plasma membrane | 69.45 | 71.05 |
| AT3G07950.1 | Thale cress | plasma membrane | 69.45 | 71.05 |
| CDY22146 | Canola | plasma membrane | 67.52 | 70.71 |
| Bra040042.1-P | Field mustard | plasma membrane | 68.81 | 70.16 |
| KRH34890 | Soybean | plasma membrane | 69.45 | 66.46 |
| KRH75962 | Soybean | endoplasmic reticulum, vacuole | 29.58 | 64.34 |
| GSMUA_Achr4P20820_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 65.59 | 64.15 |
| EER99823 | Sorghum | plasma membrane | 63.99 | 63.17 |
| GSMUA_Achr7P01900_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 64.31 | 62.89 |
| Os03t0358200-00 | Rice | golgi | 63.02 | 62.42 |
| Os07t0655400-01 | Rice | plastid | 62.38 | 61.39 |
| TraesCS2B01G159600.1 | Wheat | plasma membrane, plastid | 60.77 | 60.19 |
| TraesCS2D01G138200.1 | Wheat | golgi | 60.45 | 59.87 |
| TraesCS2A01G135700.1 | Wheat | plasma membrane, plastid | 60.45 | 59.87 |
| EER92238 | Sorghum | plastid | 60.77 | 58.88 |
| KRG91881 | Soybean | extracellular, golgi, plasma membrane | 38.26 | 58.62 |
| Zm00001d029226_P001 | Maize | plasma membrane | 60.45 | 55.79 |
| HORVU0Hr1G002680.2 | Barley | golgi | 48.87 | 54.29 |
| Zm00001d047446_P002 | Maize | plasma membrane, plastid | 60.45 | 53.87 |
| Zm00001d007067_P003 | Maize | plasma membrane | 62.7 | 52.0 |
| Os04t0103300-01 | Rice | peroxisome | 47.59 | 46.54 |
| Zm00001d024933_P003 | Maize | plasma membrane | 45.66 | 44.51 |
| TraesCS2B01G053000.1 | Wheat | plasma membrane | 45.34 | 44.48 |
| TraesCS2A01G040100.2 | Wheat | golgi, unclear | 45.34 | 44.2 |
| TraesCS2D01G038700.1 | Wheat | plasma membrane | 45.34 | 44.2 |
| EES11733 | Sorghum | plasma membrane | 45.34 | 44.2 |
| Zm00001d004543_P001 | Maize | extracellular | 45.02 | 43.61 |
| HORVU2Hr1G006030.4 | Barley | golgi, plasma membrane | 46.62 | 43.54 |
Protein Annotations
| EntrezGene:100258140 | wikigene:100258140 | MapMan:19.4.2.6 | ProteinID:CBI31477 | ProteinID:CBI31477.3 | UniProt:D7TMB0 |
| InterPro:DUF1751_Mem_euk | EMBL:FN595998 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006890 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| EntrezGene:LOC100258140 | wikigene:LOC100258140 | PFAM:PF08551 | PANTHER:PTHR13377 | PANTHER:PTHR13377:SF6 | SMART:SM01160 |
| SUPFAM:SSF144091 | TIGR:TC57698 | TMHMM:TMhelix | UniParc:UPI00015C9D4A | ArrayExpress:VIT_13s0019g04120 | EnsemblPlantsGene:VIT_13s0019g04120 |
| EnsemblPlants:VIT_13s0019g04120.t01 | unigene:Vvi.556 | RefSeq:XP_002275709 | RefSeq:XP_002275709.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr13:-:5400315..5405245
Molecular Weight (calculated)
34398.0 Da
IEP (calculated)
7.931
GRAVY (calculated)
0.354
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSALSGGT GNFSGFTRLC KGLAVVIVGG HVVVQFFPSA VAYLALIPAR TIPFAWNLIT SGYIEQTIYG TVVSTVGLLF LGKLLEPIWG TREFLKFIFV
101: VNFLTSVCVF ITAIALYYIT RQENYLYMPL SGFHGVLSGF LVGIKQIIPD QELSLFSLLK IRARWLPSLM LLLSIAISFF TTESAAYLPA LIFGTYMGWI
201: YLRYLQRKPE TRLKGDPSDE FAFSTFFPEF LRPVIDPIGS VFGRLCCGRF EISDEDRGHT LGGAPLPGSD PIEASRRRER GARALEERLA VERLTAGESA
301: KESGRDAVED V
101: VNFLTSVCVF ITAIALYYIT RQENYLYMPL SGFHGVLSGF LVGIKQIIPD QELSLFSLLK IRARWLPSLM LLLSIAISFF TTESAAYLPA LIFGTYMGWI
201: YLRYLQRKPE TRLKGDPSDE FAFSTFFPEF LRPVIDPIGS VFGRLCCGRF EISDEDRGHT LGGAPLPGSD PIEASRRRER GARALEERLA VERLTAGESA
301: KESGRDAVED V
001: MSSPGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
101: TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR
201: RPETKLRGDP SDDFAFSTFF PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE RLGTERLVPA RNKDELQSDG
301: LDNV
Arabidopsis Description
RBL19Rhomboid-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF05]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.