Factsheet for VIT_10s0003g01830.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol, plasma membrane

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0229g00130.t01
VIT_00s0238g00020.t01
VIT_00s0238g00030.t01
VIT_00s0252g00030.t01
VIT_00s0260g00060.t01
VIT_00s0809g00010.t01
VIT_00s1217g00020.t01
VIT_01s0010g03450.t01
VIT_01s0010g03480.t01
VIT_01s0011g00570.t01
VIT_01s0026g01890.t01
VIT_02s0025g04130.t01
VIT_02s0025g05160.t01
VIT_03s0017g00640.t01
VIT_03s0038g02520.t01
VIT_03s0091g00720.t01
VIT_04s0008g03100.t01
VIT_04s0069g00770.t01
VIT_05s0020g03160.t01
VIT_05s0049g00200.t01
VIT_05s0062g00130.t01
VIT_06s0004g04200.t01
VIT_07s0005g01960.t01
VIT_08s0007g07390.t01
VIT_08s0032g01150.t01
VIT_09s0002g04220.t01
VIT_09s0002g06380.t01
VIT_09s0054g00710.t01
VIT_09s0054g00930.t01
VIT_11s0016g01160.t01
VIT_11s0016g03470.t01
VIT_11s0149g00310.t01
VIT_12s0035g00920.t01
VIT_12s0057g01000.t01
VIT_12s0059g01040.t01
VIT_12s0059g02160.t01
VIT_12s0059g02180.t01
VIT_12s0059g02220.t01
VIT_12s0059g02230.t01
VIT_13s0067g00220.t01
VIT_13s0067g00280.t01
VIT_14s0030g01370.t01
VIT_14s0060g00830.t01
VIT_14s0066g01570.t01
VIT_14s0066g01650.t01
VIT_15s0021g00650.t01
VIT_15s0045g01310.t01
VIT_15s0048g00220.t01
VIT_15s0048g02980.t01
VIT_16s0039g02700.t01
VIT_18s0001g03160.t01
VIT_18s0001g03450.t01
VIT_18s0001g11760.t01
VIT_18s0001g13360.t01
VIT_18s0001g14840.t01
VIT_18s0001g15330.t01
VIT_18s0072g01050.t01
VIT_19s0085g00270.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19030.1	VIT_05s0049g00200.t01	AT1G04340.1	21798944
AT4G19030.1	VIT_07s0005g01960.t01	AT1G09330.1	21798944
AT4G19030.1	VIT_14s0060g00830.t01	AT1G09330.1	21798944
AT4G19030.1	VIT_01s0026g01890.t01	AT1G14360.1	21798944
AT4G19030.1	VIT_09s0054g00710.t01	AT1G16790.1	21798944
AT4G19030.1	VIT_18s0001g15330.t01	AT1G21460.1	21798944
AT4G19030.1	VIT_00s0809g00010.t01	AT1G23850.1	21798944
AT4G19030.1	VIT_00s1217g00020.t01	AT1G23850.1	21798944
AT4G19030.1	VIT_14s0066g01570.t01	AT1G23850.1	21798944
AT4G19030.1	VIT_00s0238g00020.t01	AT1G33800.1	21798944
AT4G19030.1	VIT_00s0238g00030.t01	AT1G33800.1	21798944
AT4G19030.1	VIT_15s0021g00650.t01	AT1G44750.1	21798944
AT4G19030.1	VIT_18s0001g03160.t01	AT1G44800.1	21798944
AT4G19030.1	VIT_18s0001g11760.t01	AT1G47530.1	21798944
AT4G19030.1	VIT_09s0054g00930.t01	AT1G50430.1	21798944
AT4G19030.1	VIT_09s0002g04220.t01	AT1G52280.1	21798944
AT4G19030.1	VIT_02s0025g05160.t01	AT1G62880.1	21798944
AT4G19030.1	VIT_02s0025g04130.t01	AT1G63120.1	21798944
AT4G19030.1	VIT_18s0001g13360.t01	AT1G75500.1	21798944
AT4G19030.1	VIT_19s0085g00270.t01	AT1G77350.1	21798944
AT4G19030.1	VIT_09s0002g06380.t01	AT1G80170.1	21798944
AT4G19030.1	VIT_01s0026g01890.t01	AT2G02810.1	21798944
AT4G19030.1	VIT_01s0011g00570.t01	AT2G03505.1	21798944
AT4G19030.1	VIT_03s0091g00720.t01	AT2G14835.2	21798944
AT4G19030.1	VIT_18s0001g14840.t01	AT2G16800.1	21798944
AT4G19030.1	VIT_12s0059g01040.t01	AT2G32580.1	21798944
AT4G19030.1	VIT_14s0030g01370.t01	AT3G05100.1	21798944
AT4G19030.1	VIT_08s0032g01150.t01	AT3G11820.1	21798944
AT4G19030.1	VIT_12s0059g02160.t01	AT3G21690.1	21798944
AT4G19030.1	VIT_12s0059g02180.t01	AT3G21690.1	21798944
AT4G19030.1	VIT_12s0059g02220.t01	AT3G21690.1	21798944
AT4G19030.1	VIT_12s0059g02230.t01	AT3G21690.1	21798944
AT4G19030.1	VIT_00s0260g00060.t01	AT3G25220.1	21798944
AT4G19030.1	VIT_14s0066g01650.t01	AT3G28050.1	21798944
AT4G19030.1	VIT_11s0016g01160.t01	AT3G42725.1	21798944
AT4G19030.1	VIT_06s0004g04200.t01	AT3G46060.1	21798944
AT4G19030.1	VIT_00s0252g00030.t01	AT3G57280.1	21798944
AT4G19030.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT4G19030.1	VIT_15s0048g02980.t01	AT3G61870.1	21798944
AT4G19030.1	VIT_01s0010g03450.t01	AT4G01430.1	21798944
AT4G19030.1	VIT_01s0010g03480.t01	AT4G01430.1	21798944
AT4G19030.1	VIT_18s0001g03450.t01	AT4G08230.1	21798944
AT4G19030.1	VIT_18s0072g01050.t01	AT4G09580.1	21798944
AT4G19030.1	VIT_12s0057g01000.t01	AT4G13500.1	21798944
AT4G19030.1	VIT_05s0062g00130.t01	AT4G14160.1	21798944
AT4G19030.1	VIT_05s0020g03160.t01	AT4G14950.1	21798944
AT4G19030.1	VIT_00s0229g00130.t01	AT4G17340.1	21798944
AT4G19030.1	VIT_13s0067g00220.t01	AT4G23400.1	21798944
AT4G19030.1	VIT_12s0035g00920.t01	AT4G24310.1	21798944
AT4G19030.1	VIT_04s0008g03100.t01	AT4G31130.1	21798944
AT4G19030.1	VIT_04s0069g00770.t01	AT4G31600.1	21798944
AT4G19030.1	VIT_03s0038g02520.t01	AT4G35100.1	21798944
AT4G19030.1	VIT_13s0067g00280.t01	AT5G05760.1	21798944
AT4G19030.1	VIT_08s0007g07390.t01	AT5G18150.1	21798944
AT4G19030.1	VIT_11s0149g00310.t01	AT5G18150.1	21798944
AT4G19030.1	VIT_11s0016g03470.t01	AT5G19570.1	21798944
AT4G19030.1	VIT_15s0045g01310.t01	AT5G26667.1	21798944
AT4G19030.1	VIT_05s0049g00200.t01	AT5G43460.1	21798944
AT4G19030.1	VIT_16s0039g02700.t01	AT5G51150.1	21798944
AT4G19030.1	VIT_03s0017g00640.t01	AT5G64290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071510	Potato	plasma membrane	75.18	76.53
Solyc03g005980.2.1	Tomato	plasma membrane	74.82	76.17
PGSC0003DMT400073246	Potato	plasma membrane	77.31	75.17
KRH59036	Soybean	plasma membrane	71.63	74.81
Solyc02g071920.2.1	Tomato	plasma membrane	76.6	74.48
KRH11076	Soybean	cytosol	71.99	74.36
KRH21197	Soybean	cytosol, peroxisome, plasma membrane	71.63	73.99
KRH42926	Soybean	plasma membrane	70.21	72.26
AT4G18910.1	Thale cress	golgi, peroxisome, vacuole	71.63	68.71
KRH59035	Soybean	plasma membrane	65.96	68.63
CDX98596	Canola	cytosol, peroxisome, plasma membrane	71.28	67.45
CDY01565	Canola	cytosol, peroxisome, plasma membrane	71.28	67.45
Bra012567.1-P	Field mustard	cytosol, peroxisome, plasma membrane	71.28	67.45
CDX99411	Canola	cytosol, peroxisome, plasma membrane	70.92	67.34
Bra013361.1-P	Field mustard	cytosol, peroxisome, plasma membrane	70.57	67.0
CDX78905	Canola	cytosol, peroxisome, plasma membrane	70.57	67.0
KRH42923	Soybean	extracellular	62.41	64.94
AT4G19030.1	Thale cress	plasma membrane	67.73	64.53
KRH45251	Soybean	extracellular	18.79	58.24
VIT_11s0078g00490.t01	Wine grape	extracellular, peroxisome, vacuole	17.02	53.93
VIT_14s0006g01540.t01	Wine grape	plasma membrane	51.42	51.6
TraesCS7A01G355000.1	Wheat	peroxisome	50.35	50.9
TraesCS7B01G272700.1	Wheat	plasma membrane	50.0	50.54
TraesCS7D01G367800.1	Wheat	golgi, peroxisome, plasma membrane	49.65	50.18
KXG20157	Sorghum	golgi, nucleus, plasma membrane	50.0	48.45
Os06t0552700-01	Rice	cytosol, peroxisome, plastid	46.81	48.35
VIT_07s0141g00080.t01	Wine grape	extracellular	20.57	46.77
VIT_07s0141g00160.t01	Wine grape	extracellular	20.57	46.77
Zm00001d046303_P001	Maize	golgi, peroxisome, plasma membrane	45.74	40.69
VIT_02s0025g03260.t01	Wine grape	plastid	42.55	40.27
VIT_14s0006g01560.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	16.31	39.32
VIT_14s0108g00700.t01	Wine grape	peroxisome	39.72	38.1
HORVU7Hr1G088900.1	Barley	cytosol, golgi, plasma membrane	25.89	34.6
VIT_05s0020g02740.t01	Wine grape	plasma membrane	33.69	32.42
VIT_09s0070g00080.t01	Wine grape	plastid	39.72	31.64
GSMUA_Achr4P10230_001	Banana	plastid	22.7	20.38

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:100263543	wikigene:100263543	MapMan:24.3.1.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
ProteinID:CBI30735	ProteinID:CBI30735.3	UniProt:D7TJR3	EMBL:FN595992	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833
GO:GO:0008150	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220
GO:GO:0055085	InterPro:IPR023271	EntrezGene:LOC100263543	wikigene:LOC100263543	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF189	SUPFAM:SSF81338
TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0001BE3848	ArrayExpress:VIT_10s0003g01830	EnsemblPlantsGene:VIT_10s0003g01830	EnsemblPlants:VIT_10s0003g01830.t01
RefSeq:XP_002264957	RefSeq:XP_002264957.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:+:3271408..3273259

Molecular Weight (calculated)

29825.2 Da

IEP (calculated)

9.372

GRAVY (calculated)

0.403

Length

282 amino acids

Sequence
(BLAST)

001: MGEISGANGN HEVSLNIKDS DANHNPPPPS TATKQGSTSS FSFPFVQKLI AEVLGTYFLI FAGCAAVVVN SDKDSVVTLP GISIVWGLVV MVMVYSVGHI
101: SGAHFNPAVT IAFATCKRFP WKQVPAYVVA QVIGSTLASG TLRLIFNGKQ DHFPGTLPAG SDLQSFVIEF IITFYLMFVI SGVATDNRAI GELAGLAVGA
201: TVLLNVMFAG PISGASMNPA RSLGPAIVSN TYRGIWIYLL APTCGAISGA WVYNIIRFTD KPLREITKSG SFLKSKSSRN GS

Best Arabidopsis Sequence Match ( AT4G18910.1 )
(BLAST)

001: MAEISGNGGD ARDGAVVVNL KEEDEQQQQQ QAIHKPLKKQ DSLLSISVPF LQKLMAEVLG TYFLIFAGCA AVAVNTQHDK AVTLPGIAIV WGLTVMVLVY
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR

Arabidopsis Description

NIP1-2Aquaporin NIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFP7]
SUBAcon: [peroxisome,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.