Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g03800.t01 | |
| VIT_15s0046g00260.t01 | |
| VIT_15s0048g00220.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G18150.1 | VIT_01s0010g03800.t01 | AT1G27300.1 | 21798944 |
| AT5G18150.1 | VIT_15s0046g00260.t01 | AT2G46550.1 | 21798944 |
| AT5G18150.1 | VIT_15s0048g00220.t01 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85592 | Canola | extracellular | 53.93 | 64.86 |
| Bra023477.1-P | Field mustard | extracellular | 53.93 | 64.86 |
| Bra023476.1-P | Field mustard | extracellular | 53.93 | 64.86 |
| AT5G18150.1 | Thale cress | extracellular | 55.06 | 64.47 |
| VIT_11s0149g00310.t01 | Wine grape | extracellular | 62.92 | 63.64 |
| CDY53255 | Canola | extracellular | 55.06 | 62.03 |
| KRH70160 | Soybean | extracellular | 59.55 | 61.63 |
| KRH08496 | Soybean | extracellular | 58.43 | 59.77 |
| Bra006442.1-P | Field mustard | extracellular | 55.06 | 59.76 |
| CDY25454 | Canola | extracellular | 55.06 | 59.76 |
| CDX91042 | Canola | extracellular | 51.69 | 59.74 |
| CDX70798 | Canola | extracellular | 55.06 | 59.04 |
| CDX78780 | Canola | extracellular | 55.06 | 59.04 |
| CDY38491 | Canola | extracellular | 51.69 | 58.97 |
| Bra002138.1-P | Field mustard | extracellular | 53.93 | 58.54 |
| AT5G14602.1 | Thale cress | extracellular | 50.56 | 56.25 |
| KRG94827 | Soybean | endoplasmic reticulum, extracellular | 49.44 | 54.32 |
| KRH06709 | Soybean | endoplasmic reticulum, extracellular | 51.69 | 52.87 |
| GSMUA_Achr10P... | Banana | extracellular | 47.19 | 51.22 |
| Solyc06g075190.1.1 | Tomato | extracellular | 52.81 | 49.47 |
| CDX91043 | Canola | extracellular | 50.56 | 48.91 |
| PGSC0003DMT400008688 | Potato | extracellular | 51.69 | 48.42 |
| GSMUA_Achr6P11540_001 | Banana | extracellular | 43.82 | 47.56 |
| CDY02643 | Canola | cytosol, golgi, nucleus | 47.19 | 34.43 |
| VIT_06s0004g07850.t01 | Wine grape | golgi | 39.33 | 29.41 |
Protein Annotations
| ArrayExpress:VIT_08s0007g07390 | EMBL:FN595991 | EnsemblPlants:VIT_08s0007g07390.t01 | EnsemblPlantsGene:VIT_08s0007g07390 | EntrezGene:100255598 | EntrezGene:LOC100255598 |
| PANTHER:PTHR34132 | PANTHER:PTHR34132:SF1 | ProteinID:CCB55198 | ProteinID:CCB55198.1 | RefSeq:XP_002276860 | RefSeq:XP_002276860.1 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00015CA7BD | UniProt:F6HLB5 | wikigene:100255598 | wikigene:LOC100255598 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr8:-:20939616..20940192
Molecular Weight (calculated)
10063.0 Da
IEP (calculated)
8.047
GRAVY (calculated)
-0.155
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MCPLRFILVF LSAVLAGYFA WSTVRSSQEN ALVSEDSCPQ TTSSSSKDKQ ELNFKTMVAD GFWVFVDMAS GRYLWRNLKG KCHEDVKNS
1: MCPMRFLLVF FSAVLAGYFA WKTVSSSPEF DSPDELNEKQ ELNLKKKMEN GFWVFVDMAS GRYLWRNLKE MREKSQ
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FK55]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.