CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX80028
CDX84933
CDX89063
CDY03907
CDY15722
CDY27317
CDY27605
CDY41153
CDY48365
CDY56879
CDY61731

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18150.1	CDX84933	AT1G27300.1	21798944
AT5G18150.1	CDY03907	AT1G27300.1	21798944
AT5G18150.1	CDY15722	AT1G27300.1	21798944
AT5G18150.1	CDY27605	AT1G27300.1	21798944
AT5G18150.1	CDX80028	AT2G46550.1	21798944
AT5G18150.1	CDY27317	AT2G46550.1	21798944
AT5G18150.1	CDY56879	AT2G46550.1	21798944
AT5G18150.1	CDY61731	AT2G46550.1	21798944
AT5G18150.1	CDX67837	AT3G60600.1	21798944
AT5G18150.1	CDX71796	AT3G60600.1	21798944
AT5G18150.1	CDX89063	AT3G60600.1	21798944
AT5G18150.1	CDY41153	AT3G60600.1	21798944
AT5G18150.1	CDY48365	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006442.1-P	Field mustard	extracellular	92.77	93.9
CDX78780	Canola	extracellular	92.77	92.77
CDY38491	Canola	extracellular	78.31	83.33
CDY25454	Canola	extracellular	81.93	82.93
AT5G18150.1	Thale cress	extracellular	72.29	78.95
CDY53255	Canola	extracellular	74.7	78.48
CDX85592	Canola	extracellular	61.45	68.92
CDX91042	Canola	extracellular	60.24	64.94
VIT_11s0149g00310.t01	Wine grape	extracellular	59.04	55.68
VIT_08s0007g07390.t01	Wine grape	extracellular	59.04	55.06
KRH70160	Soybean	extracellular	56.63	54.65
KRH08496	Soybean	extracellular	56.63	54.02
CDX91043	Canola	extracellular	57.83	52.17
KRG94827	Soybean	endoplasmic reticulum, extracellular	50.6	51.85
GSMUA_Achr10P...	Banana	extracellular	46.99	47.56
CDY02643	Canola	cytosol, golgi, nucleus	69.88	47.54
Solyc06g075190.1.1	Tomato	extracellular	54.22	47.37
KRH06709	Soybean	endoplasmic reticulum, extracellular	49.4	47.13
GSMUA_Achr6P11540_001	Banana	extracellular	45.78	46.34
PGSC0003DMT400008688	Potato	extracellular	53.01	46.32
CDY43858	Canola	extracellular	42.17	40.23
CDY70047	Canola	extracellular	42.17	40.23
CDX88672	Canola	extracellular	40.96	40.0
CDY71001	Canola	extracellular	42.17	39.77

Protein Annotations

EnsemblPlants:CDX70798	EnsemblPlantsGene:GSBRNA2T00140680001	PANTHER:PTHR34132	PANTHER:PTHR34132:SF1	ProteinID:CDX70798	ProteinID:CDX70798.1
SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EE14B2	MapMan:35.2	:	:

Description

BnaC03g08820D

Coordinates

chrLK031791:-:2052993..2053718

Molecular Weight (calculated)

9486.6 Da

IEP (calculated)

8.734

GRAVY (calculated)

-0.069

Length

83 amino acids

Sequence
(BLAST)

1: MCPLRFLLVF FSAVLAGYFA WKTVSSSPEI ISEDDDGSPV ELNEKQGLCF KKKMERGLWV FVDMASGKYL WRNLKLMSEK GSK

Best Arabidopsis Sequence Match ( AT5G18150.1 )
(BLAST)

1: MCPMRFLLVF FSAVLAGYFA WKTVSSSPEF DSPDELNEKQ ELNLKKKMEN GFWVFVDMAS GRYLWRNLKE MREKSQ

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FK55]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.